Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0469 ATGAGTTTTACCGATCATTTTTTGTCTTTTTTGCGATTCGACATGTTTACTTCGATGAGGACGATGAATCTTCTTGTGCTTTTATTCTTCTCTGTGACGACTTCATGCTATATGGCGGTGGCCAAGGTGGTTCTGATTGGGAACAACGTCACTCTATCCTTCGACGACATTGAAGCTAATTTTGCTCCAGCGATGAAAGGTTCTGGAGAATGTGGTGTCTTGTATATTGCAGAGCCGGTTGATGCATGTACAGAACTGACAAATAAAGTTGAACTGCATTCAAATACAAGTTCACCTTTTGTTTTAATAGTTAGAGGGGGGTGTAGCTTTGAAGAGAAAGTCAGAAGAGCACAAAAGGCTGGCTTCAAAGCTGCAATTGTCTATGATAATGAAGACGATGGAGTCTTAGTTTCAATGGCAGGAAATTCAGGTGGTATAAAAATACATGCTGTATTTGTTGCTAAAGCCTCAGGTGAAATATTGAAAAGATATGTTGGACTGACTAACATTGAAGTGTGGCTAATTCCAAGCTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTGCTAGCAATGTCGGCAGTTCTGGCTACTTGTTTCTTTGTCCGGAGGCATCGCATACGAAGAGAAAGGCCTCAGGCTTCTCGTGTTCGGGAGTTTCATGGCATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACCTCTGTTTTAGAGGATAACTGCACATCAATGACATGTGCAATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAAGAACTGGTCTAGCTGATCCTCCACCTTCAGAATCCACGCCTTTGCTTTCATCTGGCCCAGCATCTGCAGCATCCTCTGTAGCATCATCTGTGAGATCATCTTTAGCATCATCTTCTGCCATACAAATTGCACAGTCCCCGTCTGTTTCTTGGAACCATTCTGTGGCCAGTACACCCTACATTCACCCATCACTTAGGTCCCACCACCACTCTCCCTTCATGAGTGTCAGTCGAAGCTCAGTAGATCTTAGGAATGCATCCCAAAGATCTCAAGCTTCTCATTTGAATTCTCCACATTCTATGGGTTACCCATCAATGTCATCTATGAACTCGAGAAAAACTGCAGTGGTATTAATTCAGTATGTTCTGATTGTTTAA 1272 0.4261 MSFTDHFLSFLRFDMFTSMRTMNLLVLLFFSVTTSCYMAVAKVVLIGNNVTLSFDDIEANFAPAMKGSGECGVLYIAEPVDACTELTNKVELHSNTSSPFVLIVRGGCSFEEKVRRAQKAGFKAAIVYDNEDDGVLVSMAGNSGGIKIHAVFVAKASGEILKRYVGLTNIEVWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTSVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSGPASAASSVASSVRSSLASSSAIQIAQSPSVSWNHSVASTPYIHPSLRSHHHSPFMSVSRSSVDLRNASQRSQASHLNSPHSMGYPSMSSMNSRKTAVVLIQYVLIV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0469 423 SMART ring_2 253 294 IPR001841 -
Prci1g0469 423 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 213 300 - -
Prci1g0469 423 Pfam Ring finger domain 252 295 IPR001841 -
Prci1g0469 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 213 300 IPR013083 -
Prci1g0469 423 Gene3D - 35 175 - -
Prci1g0469 423 SUPERFAMILY RING/U-box 238 306 - -
Prci1g0469 423 MobiDBLite consensus disorder prediction 375 405 - -
Prci1g0469 423 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 41 175 - -
Prci1g0469 423 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 177 310 - -
Prci1g0469 423 Pfam PA domain 95 161 IPR003137 -
Prci1g0469 423 ProSiteProfiles Zinc finger RING-type profile. 253 295 IPR001841 -
Prci1g0469 423 SUPERFAMILY PA domain 95 166 IPR046450 -
Prci1g0469 423 CDD PA_C_RZF_like 29 182 IPR044744 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0469 Prci-Chr1 4366412 4372516 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0469 41 409 C3H Transcription Factor Family AT1G22670 50.131 1.49e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0469 K15692 - gmx:100791248 588.956