Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Prci1g0466 | ATGAGTTTTACCGATCATTTTTTGTCTTTTTTGCGATTCGACATGTTTACTTCGATGAGGACGATGAATCTTCTTGTGCTTTTATTCTTCTCTGTGACGACTTCATGCTATATGGCGGTGGCCAAGGTGGTTCTGATTGGGAACAACGTCACTCTATCCTTCGACGACATTGAAGCTAATTTTGCTCCAGCGATGAAAGGTTCTGGAGAATGTGGTGTCTTGTATATTGCAGAGCCGGTTGATGCATGTACAGAACTGACAAATAAAGTTGAACTGCATTCAAATACAAGTTCACCTTTTGTTTTAATAGTTAGAGGGGGGTGTAGCTTTGAAGAGAAAGTCAGAAGAGCACAAAAGGCTGGCTTCAAAGCTGCAATTGTCTATGATAATGAAGACGATGGAGTCTTAGTTTCAATGGCAGGAAATTCAGGTGGTATAAAAATACATGCTGTATTTGTTGCTAAAGCCTCAGGTGAAATATTGAAAAGATATGTTGGACTGACTAACATTGAAGTGTGGCTAATTCCAAGCTTTGAAAACTCAGCATGGTCTATCATGGCAATTTCATTCATTTCCCTGCTAGCAATGTCGGCAGTTCTGGCTACTTGTTTCTTTGTCCGGAGGCATCGCATACGAAGAGAAAGGCCTCAGGCTTCTCGTGTTCGGGAGTTTCATGGCATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACCTCTGTTTTAGAGGATAACTGCACATCAATGACATGTGCAATATGCCTTGAAGACTATTGTGTTGGAGAGAAGCTCAGGATTCTGCCCTGCTGTCACAAGTTTCATGCTGCTTGTGTGGATTCTTGGCTTACTTCATGGAGAACCTTTTGTCCAGTTTGTAAGCGTGATGCAAGAACTGGTCTAGCTGATCCTCCACCTTCAGAATCCACGCCTTTGCTTTCATCTGGCCCAGCATCTGCAGCATCCTCTGTAGCATCATCTAAAAACTGCAGTGGTATTAATTCAGTATGTTCTGATTGTTTAATAGTTTTATCAGCTGGGCAGAGTTTCTCTCCTGGAAATACATAG | 1071 | 0.4192 | MSFTDHFLSFLRFDMFTSMRTMNLLVLLFFSVTTSCYMAVAKVVLIGNNVTLSFDDIEANFAPAMKGSGECGVLYIAEPVDACTELTNKVELHSNTSSPFVLIVRGGCSFEEKVRRAQKAGFKAAIVYDNEDDGVLVSMAGNSGGIKIHAVFVAKASGEILKRYVGLTNIEVWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTSVLEDNCTSMTCAICLEDYCVGEKLRILPCCHKFHAACVDSWLTSWRTFCPVCKRDARTGLADPPPSESTPLLSSGPASAASSVASSKNCSGINSVCSDCLIVLSAGQSFSPGNT | 356 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Prci1g0466 | 356 | SMART | ring_2 | 253 | 294 | IPR001841 | - | |
Prci1g0466 | 356 | Gene3D | - | 35 | 175 | - | - | |
Prci1g0466 | 356 | FunFam | Receptor homology region transmembrane domain-and RING domain-containing protein 2 | 41 | 175 | - | - | |
Prci1g0466 | 356 | ProSiteProfiles | Zinc finger RING-type profile. | 253 | 295 | IPR001841 | - | |
Prci1g0466 | 356 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 213 | 300 | IPR013083 | - | |
Prci1g0466 | 356 | Pfam | Ring finger domain | 252 | 295 | IPR001841 | - | |
Prci1g0466 | 356 | PANTHER | RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED | 177 | 310 | - | - | |
Prci1g0466 | 356 | CDD | PA_C_RZF_like | 29 | 182 | IPR044744 | - | |
Prci1g0466 | 356 | Pfam | PA domain | 95 | 161 | IPR003137 | - | |
Prci1g0466 | 356 | FunFam | Receptor homology region transmembrane domain-and RING domain-containing protein 2 | 213 | 300 | - | - | |
Prci1g0466 | 356 | SUPERFAMILY | PA domain | 95 | 166 | IPR046450 | - | |
Prci1g0466 | 356 | SUPERFAMILY | RING/U-box | 237 | 306 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Prci1g0466 | Prci-Chr1 | 4366409 | 4372516 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Prci1g0466 | 41 | 322 | C3H Transcription Factor Family | AT1G22670 | 55.245 | 4.02e-103 | 308 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Prci1g0466 | K15692 | - | gmx:100793048 | 505.368 |