Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0419 ATGGGTAAGGAAAAGACTCACATCAACATTGTGGTCATTGGCCATGTCGACTCTGGGAAGTCAACAACTACCGGTCATCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTTATCGAGAGGTTCGAGAAAGAAGCTGCTGAGATGAACAAGAGGTCGTTCAAGTATGCGTGGGTGCTGGACAAGCTCAAGGCTGAGCGTGAAAGAGGAATCACAATTGACATTGCACTCTGGAAATTCGAGACCAACAAGTACTACTGCACGGTCATTGACGCACCTGGACACAGGGATTTCATCAAGAACATGATCACGGGAACATCTCAGGCTGACTGTGCGGTCCTCATCATTGATTCCACCACGGGTGGTTTTGAAGCTGGTATTTCCAAGGACGGACAGACCCGTGAGCACGCGCTCCTTGCTTTCACCCTTGGTGTGAGGCAGATGATTTGCTGCTGCAACAAGATGGATGCCACGACTCCCAAGTACTCCAAGGCCAGGTACGATGAAATCGTGAAGGAAGTCTCATCCTATCTGAAGAAGGTCGGCTACAACCCTGACAAGATTCCGTTCGTTCCGATCTCTGGTTTTGAGGGAGACAACATGATCGAGAGGTCGACCAACCTTGACTGGTACAAGGGACCGACCCTTCTGGAGGCCCTTGACCAGGTCCAGGAGCCCAAGAGACCGTCAGACAAGCCTCTGAGGTTGCCCCTGCAGGACGTGTACAAGATTGGAGGAATTGGAACTGTTCCAGTGGGACGGGTTGAGACTGGCATTCTGAAGCCCGGTATGGTGGTCACTTTTGGGCCGACTGGACTGACAACTGAAGTGAAGTCTGTGGAGATGCACCACGAGGCCCTCCAAGAGGCTCTTCCGGGTGACAACGTGGGATTCAACGTGAAGAACGTGGCTGTGAAGGATCTGAAGCGTGGGTATGTTGCCTCAAACTCAAAGGACGATCCGGCCAAGGAGGCCGCCAACTTCACAGCTCAGGTCATTATCATGAACCATCCGGGCCAGATAGGCAACGGTTATGCTCCTGTGCTGGACTGCCACACCTCCCACATTGCGGTCAAGTTTGCTGAACTGTTGACGAAGATTGACAGGCGATCTGGCAAGGAGCTTGAGAAGGAGCCCAAGTTCTTGAAGAACGGTGATGCTGGTATGGTGAAGATGATTCCAACGAAGCCTATGGTGGTGGAGACTTTCTCGGAGTATCCTCCGCTTGGTCGATTTGCTGTGAGGGACATGCGTCAAACGGTGGCGTGGGAGTGA 1275 0.5216 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVRQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQVQEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFGPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGYVASNSKDDPAKEAANFTAQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAELLTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAWE 424
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0419 424 Pfam Elongation factor Tu GTP binding domain 5 222 IPR000795 GO:0003924|GO:0005525
Prci1g0419 424 CDD EF1_alpha_III 323 422 - -
Prci1g0419 424 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Prci1g0419 424 CDD EF1_alpha_II 230 320 - -
Prci1g0419 424 Pfam Elongation factor Tu C-terminal domain 321 422 IPR004160 -
Prci1g0419 424 Gene3D Translation factors 229 316 - -
Prci1g0419 424 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 326 422 IPR009001 -
Prci1g0419 424 Gene3D Translation factors 323 423 - -
Prci1g0419 424 Pfam Elongation factor Tu domain 2 248 313 IPR004161 GO:0005525
Prci1g0419 424 CDD EF1_alpha 9 227 - -
Prci1g0419 424 PANTHER TRANSLATION FACTOR 4 422 - -
Prci1g0419 424 FunFam Elongation factor 1-alpha 323 424 - -
Prci1g0419 424 FunFam Elongation factor 1-alpha 229 316 - -
Prci1g0419 424 SUPERFAMILY Translation proteins 226 321 IPR009000 -
Prci1g0419 424 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Prci1g0419 424 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Prci1g0419 424 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Prci1g0419 424 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Prci1g0419 424 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Prci1g0419 424 Gene3D - 1 226 IPR027417 -
Prci1g0419 424 NCBIfam translation elongation factor EF-1 subunit alpha 1 422 IPR004539 GO:0003746|GO:0005525|GO:0006414
Prci1g0419 424 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Prci1g0419 424 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Prci1g0419 424 FunFam Elongation factor 1-alpha 1 226 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Prci1g0419 Prci-Chr1 4100632 4103310 Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0419 1 422 Eukaryotic Initiation Factors Gene Family AT5G60390 95.972 0.0 848
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0419 K03231 - apan:127260159 843.958