Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0398 ATGGGTTATTCTCTATTATTTGTTCTCTTACTTTTATCAATTTTCATTAAACTTTGTTTAGCCATCTCTCTACCCCCTATCGAAGAACAAGAGAGAGATAAGATAACCCATTTACCAGGACAGCCAAAAAATGTAGGATTTGCTCAGTACTCTGGTTATGTGACTGTGAATGAGCAAGCAGGGAGAGCATTATTTTATTGGTTGATCGAGTCGCCTGCAAGTCGTGGACCCGAGTCCAGGCCACTTGTTTTATGGCTTAATGGTGGTCCTGGATGCTCATCCATTGCTTATGGTGCGACTGAAGAGATTGGCCCTTTTCGAATTAGTTCTGATGGGAAGTCACTTTACTTGAATCCTTATGCTTGGAACAATTTGGCAAATATACTTTTCCTTGAGTCTCCTGCTGGTGTGGGTTTTTCATATTCCAATGAAACATCAGATCTGTACACGGCGGGTGACCAGAGAACAGCTGAAGATGCTTATACATTTCTTGTTAACTGGTTTGAAAGATTTCCTCAATACAAGTATAGAGATTTTTACATTGCTGGAGAAAGTTATGCAGGTCACTATGTCCCTCAGTTGGCCCAACTTGTTTACCAAAAAAACAAGGGAGTCCAGAAGCCAACTATAAATTTAAAGGGATTTATGGTTGGAAACGCTGTTACTGATGATTACAATGATTATGTTGGCACGTTTGAGTACTGGTGGACCCATGGTTTGATTTCAGATTCCTCATATAAGATGCTGCAAATGGCCTGTAACTTTGGATCCTCCCAACATCCATCAATGCAGTGCAAGGAGGCTCTAAGAGATGCAGTTTTAGAGCAGGGAAACATTGACCCATATAGCATTTATACGCGGCCATGCAATGATACTGCTTCACTCAAGCACAGCTTGGGTGGTCGCTATCCATGGATGTCTCGAGCTTATGACCCTTGTACTGAGAGGTATTCAGCCTCGTACTTCAATCATCCTGAGGTTCAGAAGGCACTCCATGCCAATGTAACTAACATCCCATATTCATGGAAAACATGCAGTGGCATTGTTGGAGACAACTGGGCGGATTCTCCACTATCCATGCTTCCAATATATCAAGAACTCATTGGTGCTGGTCTAAAGATTTGGGTATACAGTGGAGACACTGACTCCGTGGTTCCAGTAACTGCCACGCGATATTCTATTGACGCATTGAAACTTCCCACTATCACCAATTGGTACCCTTGGTATGACAATGGCAAGGTTGGTGGATGGAGCCAAGTTTATGAAGGGCTTACGTTGGTTACAGTAACAGGAGCTGGACATGAAGTTCCACTTCATCGACCTCGCCAAGCATTCATTCTTTTCAGTCAAAAGCTCAAAATCATTCATATACATGGAGTGGGAAGCAACGCTATAAAGAACGCATTCCTCATGAGTTGA 1419 0.4257 MGYSLLFVLLLLSIFIKLCLAISLPPIEEQERDKITHLPGQPKNVGFAQYSGYVTVNEQAGRALFYWLIESPASRGPESRPLVLWLNGGPGCSSIAYGATEEIGPFRISSDGKSLYLNPYAWNNLANILFLESPAGVGFSYSNETSDLYTAGDQRTAEDAYTFLVNWFERFPQYKYRDFYIAGESYAGHYVPQLAQLVYQKNKGVQKPTINLKGFMVGNAVTDDYNDYVGTFEYWWTHGLISDSSYKMLQMACNFGSSQHPSMQCKEALRDAVLEQGNIDPYSIYTRPCNDTASLKHSLGGRYPWMSRAYDPCTERYSASYFNHPEVQKALHANVTNIPYSWKTCSGIVGDNWADSPLSMLPIYQELIGAGLKIWVYSGDTDSVVPVTATRYSIDALKLPTITNWYPWYDNGKVGGWSQVYEGLTLVTVTGAGHEVPLHRPRQAFILFSQKLKIIHIHGVGSNAIKNAFLMS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0398 472 ProSitePatterns Serine carboxypeptidases, histidine active site. 424 441 IPR033124 GO:0004185
Prci1g0398 472 FunFam Carboxypeptidase 29 291 - -
Prci1g0398 472 ProSitePatterns Serine carboxypeptidases, serine active site. 181 188 IPR018202 GO:0004185
Prci1g0398 472 SUPERFAMILY alpha/beta-Hydrolases 30 450 IPR029058 -
Prci1g0398 472 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 34 441 IPR001563 GO:0004185|GO:0006508
Prci1g0398 472 FunFam Carboxypeptidase 360 454 - -
Prci1g0398 472 Gene3D - 313 349 - -
Prci1g0398 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 167 192 IPR001563 GO:0004185|GO:0006508
Prci1g0398 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 131 141 IPR001563 GO:0004185|GO:0006508
Prci1g0398 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 118 130 IPR001563 GO:0004185|GO:0006508
Prci1g0398 472 PRINTS Carboxypeptidase C serine protease (S10) family signature 424 437 IPR001563 GO:0004185|GO:0006508
Prci1g0398 472 Gene3D alpha/beta hydrolase 29 291 IPR029058 -
Prci1g0398 472 FunFam Carboxypeptidase 310 456 - -
Prci1g0398 472 Pfam Serine carboxypeptidase 39 451 IPR001563 GO:0004185|GO:0006508
Prci1g0398 472 Gene3D - 360 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0398 Prci-Chr1 3995377 4001331 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0398 323 450 Calmodulin-binding Proteins AT2G22960 30.233 1.35e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0398 K16297 - gmx:100812000 788.104