Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0349 ATGTTTCTGGTTATGGACGAGAGGGTTTCCTCGGAAAAGTGCTTAGATTCTTCCTCGGAAAAGTGCTTAGATTCTCAATTATGGCACGCCTGTGCCGGTGCGATGGTTCAAATGCCACCCATCAATTCCAAGGTTTTCTACTTCCCTCAGGGCCATGCAGAGCACGCCCAGGGGAAGGCAGATTTCGGGTCCACCCGAATTCCTTCCTTCATTCCTTGCAGGATTTCTGGTATGAAATACATGGCAGACCCTGACACAGATGAGGTGTTTGTGAAAATGAGGCTGACACCTCTGAGGGATAATGAAATGGGTCTTGAAGATGATGCTTTTCTGGGGAACCATGGCGTTGATGGTCAAGAAAAGCCGGCTTCTTTTGCAAAGACATTGACTCAATCTGACGCCAATAATGGTGGGGGTTTCTCTGTGCCTCGTTACTGTGCAGAGACCATCTTTCCTAGGTTGGATTATTCTGCTGAGCCTCCGGTTCAGACCATTATTGCCAAGGATGTGCACGGACAGAACTGGAAGTTTAGGCATATCTATCGAGGGACCCCTCGCCGGCACCTCTTAACAACTGGATGGAGCAATTTTGTGAACCAGAAGAGGCTTGTTGCTGGGGATTCCATTGTGTTCTTGAGGGCTGAAAACGGGGATCTTTGCGTTGGAATAAGGAGGGCTAAGAAGGAGATTGGAGGTGGAATTGAGTATCCAACTGGCTGGAATCAGGCAGTCCCACTATTTGGTGGGAATTCAGGTTTCATGCGAGAAGATGAAAACTCATTGTTGAGAAGAAAATATCAGGAGGAGATGAAGGGAAGAGTGACTGCTGAATCCGTTGTTGAAGCTGTAACTTCTGCCGTTAATGGCAGGCCTTTTGAGGTTGTGTACTATCCGCGAGCTAGCACGCCGGAATTCTGCGTTAAGGCCTCGTCGGTGAGGGCTGCAATGCAAATACAGTGGTGTTCTGGGATGAGATTCAAAATGCCCTTTGAAACTGAGGATTCATCCAGGATAAGCTGGTTCATGGGAACAATATCTTCTGTTCAGGTTGCAGATCCCATTCGCTGGCCTGATTCTCCATGGCGTCTTCTACAGGTGGCGTGGGATGAACCAGATTTGCTTCAGAATGTTAAGAGTGTGAACCCTTGGTTGGTTGAACTAGTCTCAAATATGCCAACCTTCCATCTCTCTCCATTCTCACCGCCAAGAAAGAAGTCACGGTTTCTTCAGCATCCGGAATTTCCTCTCCTCAATCAGCTTCCTATGCCACCATTCCCCGCAAATCTCCTCAATCAAACTAACTCCCCGTGTAGAGTTCATGACAGTTACAGTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAATATGGTCTCTCTCCATGTGATTTCCCTTTCAACAAGCTGCAATCAGATATGCTTCTGGGCAGAATTCCCAGGCTTGACCATGCTGTCCAGCCTCCAAGACCTCGTAGCTCCTACAACAGCAGCCTGAAAAACAATGCTGAGATATCGTGCTTGTTGACCATGGGAAATCCCAGCCCGATCTTGAAGGAACCGGTTGATGCCAAAACACCGCACATCTTGTTGTTTGGCCAACGCATTCACACTGAGCAGCAGAGTTCAAACAGTACCTCTGCTAGCACAACTGGGAATAGTTCATCAGAAGGGAATTCCCAGAAGGCGTTCAATGTCGTTTCCGATGGCTCCGGATCTGCTTTGCACCGAAACAGTCCAACTGAGAATTCTTCTGAAGGAGGGTCTCCCTGGTACAAAGATCAGCATAATTCTGATATTGGAGCCGAAAACGTTAACCTCTTGTGTTTGGCTTTATAA 1833 0.4801 MFLVMDERVSSEKCLDSSSEKCLDSQLWHACAGAMVQMPPINSKVFYFPQGHAEHAQGKADFGSTRIPSFIPCRISGMKYMADPDTDEVFVKMRLTPLRDNEMGLEDDAFLGNHGVDGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDVHGQNWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFLRAENGDLCVGIRRAKKEIGGGIEYPTGWNQAVPLFGGNSGFMREDENSLLRRKYQEEMKGRVTAESVVEAVTSAVNGRPFEVVYYPRASTPEFCVKASSVRAAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPDSPWRLLQVAWDEPDLLQNVKSVNPWLVELVSNMPTFHLSPFSPPRKKSRFLQHPEFPLLNQLPMPPFPANLLNQTNSPCRVHDSYSPAGIQGARHAQYGLSPCDFPFNKLQSDMLLGRIPRLDHAVQPPRPRSSYNSSLKNNAEISCLLTMGNPSPILKEPVDAKTPHILLFGQRIHTEQQSSNSTSASTTGNSSSEGNSQKAFNVVSDGSGSALHRNSPTENSSEGGSPWYKDQHNSDIGAENVNLLCLAL 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0349 610 MobiDBLite consensus disorder prediction 535 595 - -
Prci1g0349 610 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677
Prci1g0349 610 MobiDBLite consensus disorder prediction 535 590 - -
Prci1g0349 610 SUPERFAMILY DNA-binding pseudobarrel domain 115 227 IPR015300 -
Prci1g0349 610 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677
Prci1g0349 610 CDD B3_DNA 124 225 IPR003340 GO:0003677
Prci1g0349 610 Gene3D - 319 393 - -
Prci1g0349 610 Gene3D - 123 227 IPR015300 -
Prci1g0349 610 FunFam Auxin response factor 320 393 - -
Prci1g0349 610 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 563 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci1g0349 610 FunFam Auxin response factor 123 227 - -
Prci1g0349 610 SMART B3_2 125 227 IPR003340 GO:0003677
Prci1g0349 610 Pfam Auxin response factor 282 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0349 Prci-Chr1 3630505 3633727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0349 15 569 B3 DNA Binding Superfamily AT4G30080 58.621 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci1g0349 B3 4.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0349 - - ccaj:109810654 915.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g0349 1 3630505 3633727 Prci1g0349 1 3630505 3633727 ECH