Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0348 ATGATCGGACCCAATTTCATGGACGAGATAGACTGTGGCAGCTTCTTCGACCACATTGACGACCTCCTCGATTTCCCTCCAGAAGACGTCGACGCCGCCGTCTTGCCCGCCTCCGCCTTGAATTGTAACTCCTTCCCCACCGTCTGGCCCGATGAGTCCGACTCCTTGCCCGGCTCCGACTCTGTCTTCTCTGCCAACAACGCCTCCGACCTCTCGGCCGAGCTCTCAGTTCCATATGAAGACATTGTCCAGTTGGAATGGCTTTCGAACTTTGTGGAGGACTCGTTCACTGGTGGAAGCCTGACGATGAAGAAGGTGGAGCAATCTTGCATCGCCAACAACGACTCAGCGCACAACCAATTCCAAACTTCAAGCCCGGTCTCTGTCCTCGAGAGCAGCAGCTCCTGCTCCGGGGAGAAGCCGGTGGCGGCGCCACCTCGAAGCCCGCCGGAAATGGTTGTGCCCGTTCCCTGTGGCGGACGTGCTCGCAGCAAGCGGCCACGCCCCGCCACGTTCAAGCCTCGCCTCGCGATGCAGCTCATCTCGCCGGCATCCTCCGTCGGTGAAAACACCCAGCGAAATTCAGACTGTGAGAATTTCGTGGAGTCTCATCCGGTGATCAAGATACCGAAGCAATCTTCCGGGGAGCACAAGAAGAAGAAGAAGATCAAACTGGCTTGTCCATTAGGTCCTGCTGATATGAATCAGCAAAACCCTTCGTCACAAGCAGTGAGGAAATGTATGCATTGTGAGATAACAAAGACACCACAATGGAGGGCAGGTCCAATGGGGCCAAAAACCTTATGCAATGCTTGCGGGGTTCGATACAAGTCGGGGAGGCTATTCCCGGAGTACCGGCCGGCGGCTAGCCCGACGTTTTGCCCGTCATTGCACTCCAATTCCCATAAGAAGGTGCTTGAAATGAGAAGCAAAACACCACTTACTGATGCTTCACCGGAGCTCATTCCAAACACTAACAGCAGTATTACCCTGGAATACATATGA 1005 0.5473 MIGPNFMDEIDCGSFFDHIDDLLDFPPEDVDAAVLPASALNCNSFPTVWPDESDSLPGSDSVFSANNASDLSAELSVPYEDIVQLEWLSNFVEDSFTGGSLTMKKVEQSCIANNDSAHNQFQTSSPVSVLESSSSCSGEKPVAAPPRSPPEMVVPVPCGGRARSKRPRPATFKPRLAMQLISPASSVGENTQRNSDCENFVESHPVIKIPKQSSGEHKKKKKIKLACPLGPADMNQQNPSSQAVRKCMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRSKTPLTDASPELIPNTNSSITLEYI 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0348 334 ProSitePatterns GATA-type zinc finger domain. 247 272 IPR000679 GO:0006355|GO:0043565
Prci1g0348 334 Gene3D - 241 291 IPR013088 GO:0006355|GO:0008270
Prci1g0348 334 MobiDBLite consensus disorder prediction 132 169 - -
Prci1g0348 334 ProSiteProfiles GATA-type zinc finger domain profile. 241 277 IPR000679 GO:0006355|GO:0043565
Prci1g0348 334 PANTHER GATA TRANSCRIPTION FACTOR 15 313 - -
Prci1g0348 334 FunFam GATA transcription factor 236 321 - -
Prci1g0348 334 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 245 304 - -
Prci1g0348 334 PIRSF Txn_fac_GATA_plant 2 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Prci1g0348 334 CDD ZnF_GATA 246 293 IPR000679 GO:0006355|GO:0043565
Prci1g0348 334 Pfam GATA zinc finger 247 280 IPR000679 GO:0006355|GO:0043565
Prci1g0348 334 SMART GATA_3 241 291 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0348 Prci-Chr1 3616023 3618596 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0348 1 311 C2C2-Gata Transcription Factor Family AT3G54810 40.367 3.02e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Prci1g0348 GATA 5.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0348 - - gmx:100815693 469.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g0348 1 3616023 3618596 Prci1g0348 1 3616023 3618596 ECH