Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0344 ATGGGGAGCAAATGGAAGAAGGCGAAGCTGGCTCTGGGTTTGAATCTCTGTGTCTTTGTTCCCAGAACTTCAGACGACATGGATTCGCCTCCCGCCACGGAGGTTTCCGACAGGTTATCTGATGCTGCTCTGCTTTCGCCGGGAAATTGGGACATGGCTTCCTCGCGATCGAGATCAGCCGCGCCGGTGACTTCTTCGCACGCTTTAAAGCTGTCCAAAAGTGCGAGCAAATCGTCCAAGCAAACCTGCTCAATATGCTTAACCAAAATGAAGCAAGGATGTGGGCATGCTTTGTTCACTGCAGAATGTTCGCATTCCTTCCATTTTCACTGCATTGCTTCAAATGTGAAACATGGAAACAAAATATGTCCAGTGTGCCGAGCAAAGTGGAAGGAAATACCGTTGCTGGATCCCAGTTTGGATCCTCTCCCAGGCCGAGTTTCACCGAATAATGCTTTCATGGCAGTTGTCCATGGCCTTCCTCGACCACCCCCTCGACGAGATTTAAATAGACGACATGTTGTTCCACTTCATCAGGCTCCTGAACCAGGTGTATTTGATGATGATGAATCCTTAGATCTCCAACATATATGTTCTACTAAGAGTGTTTCTGATACGGGTGCTGTCAAAACAATAGAGATTAAAACATACCCTGAAGTGTCAGTTGCTCCACAGTCCAACTCTTATTGTAACTTTAATGTTTTGGTCCATCTCAAGGCCACTGCTGTAGCAGCAGCCACCAGAACACAAAACCTGAGTAGAAATCACGCTAGCTCAACACCGGTTTCTCAGACTCCACGTGCTCCTGTTGACCTAGTGACAGTGCTTGATATTAGCGGTAGCATGGCTGGCACTAAGCTTGCACTACTAAAAAGAGCTATGGGATTTGTTATCCAGAACTTGGGCTCAAATGACCGGCTATCGGTTATTGCTTTCTCCTCCACAGCTCGCCGACTGTTTCCTCTGCGCAGAATGTCTGACTCTGGGCGGCAACAAGCTCTGCAAGCTGTTAACTCATTGGTTGCAAATGGGGGTACAAACATTGCTGAGGGCCTGAGAAAAGGTGCCAAGATAATGGAAGAACGAAGAGAAAAAAATCCAGTTGCCAGCATAATACTGTTGTCTGATGGGCAAGATACTTACACTGTTGGCGGTTCTGGTACTAACCAACCACAACTGAACTACCATTTGCTTTTGCCTATGTCTATCAGTAATCGTGGCACTTCAGGATTCCAAATTCCTGTGCATGCTTTTGGATTTGGTGCAGATCATGATGCCTCATCAATGCACTCTATTTCAGAGAATTCTGGAGGGACCTTTTCCTTCATTGAGACTGAATCTGTGATACAGGATGCATTTGCACAGTGCATTGGTGGACTTTTGAGCGTAGTGGTTCAGGAGCTGCAAGTCTCAATTGAGTGCATAGATGCAAATCTCAACCTTGTCTCGCTTAAGGCTGGAAGTTACCCAAACCGTGTGATGGCTGGTGGACGCCAAGGATTTATTGATGTTGGAGATTTGTATGCTGATGAGGAGAGAGATTTCCTAGTTTCAGTTAATGTCCCTGCTGCTTCTGGCAATGAAACATCGTTAATAAAGGTCAACTGTGTTTACAAGGATCCATTAACTCAGGAGACAACAATATCCGAAAGTGAAGAAGTAAAGTTGGAGAGGCCTGAAAAAGTTGGGCAAGTGGTTAAGTCGCTTGAAGTGGACAGACAGCATAACAGGCTTCAAGCAGCTGAGGCGATGGCCCAAGCACGAAGGGCGGCTGAACGCGGAGATTTGACAGGTGCAGTGTCAATCCTTGAAAACTGCAGAAAAATGCTCTTAGAGTCTATTTCAGCCAGATCTCAGGATCGCCTTTGTCTTGCACTGGATGCTGAACTCAAGGAAATGCAAGAGAGGATGGTGAGTCGGCACGTGTACGAAGCATCGGGGAGGGCATATATTCTCTCTGGACTGAGTTCCCACTCTTGGCAAAGGGCAACAGCAAGAGGTGATTCCACTGATAGTTCAAGTCTTGTTCAAGCATACCAGACCCCGTCGATGGCTGAGATGCTCACTCGATCTCAAGCCTCGTTTCTAGGTAGTCCATCAGGCCAGAGGCTTCTCCAACCATTGTTGTCATACAGGTCACAAACAAAGCCAAGGTAA 2157 0.4687 MGSKWKKAKLALGLNLCVFVPRTSDDMDSPPATEVSDRLSDAALLSPGNWDMASSRSRSAAPVTSSHALKLSKSASKSSKQTCSICLTKMKQGCGHALFTAECSHSFHFHCIASNVKHGNKICPVCRAKWKEIPLLDPSLDPLPGRVSPNNAFMAVVHGLPRPPPRRDLNRRHVVPLHQAPEPGVFDDDESLDLQHICSTKSVSDTGAVKTIEIKTYPEVSVAPQSNSYCNFNVLVHLKATAVAAATRTQNLSRNHASSTPVSQTPRAPVDLVTVLDISGSMAGTKLALLKRAMGFVIQNLGSNDRLSVIAFSSTARRLFPLRRMSDSGRQQALQAVNSLVANGGTNIAEGLRKGAKIMEERREKNPVASIILLSDGQDTYTVGGSGTNQPQLNYHLLLPMSISNRGTSGFQIPVHAFGFGADHDASSMHSISENSGGTFSFIETESVIQDAFAQCIGGLLSVVVQELQVSIECIDANLNLVSLKAGSYPNRVMAGGRQGFIDVGDLYADEERDFLVSVNVPAASGNETSLIKVNCVYKDPLTQETTISESEEVKLERPEKVGQVVKSLEVDRQHNRLQAAEAMAQARRAAERGDLTGAVSILENCRKMLLESISARSQDRLCLALDAELKEMQERMVSRHVYEASGRAYILSGLSSHSWQRATARGDSTDSSSLVQAYQTPSMAEMLTRSQASFLGSPSGQRLLQPLLSYRSQTKPR 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0344 718 ProSiteProfiles Zinc finger RING-type profile. 83 127 IPR001841 -
Prci1g0344 718 ProSiteProfiles VWFA domain profile. 271 457 IPR002035 -
Prci1g0344 718 Gene3D von Willebrand factor, type A domain 271 458 IPR036465 -
Prci1g0344 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 133 IPR013083 -
Prci1g0344 718 CDD vWA_C3HC4_type 270 444 - -
Prci1g0344 718 Pfam RING-like zinc finger 83 112 IPR001841 -
Prci1g0344 718 Pfam VWA / Hh protein intein-like 620 692 IPR032838 -
Prci1g0344 718 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 81 692 - -
Prci1g0344 718 SMART VWA_4 269 453 IPR002035 -
Prci1g0344 718 CDD RING-H2_WAVH2 81 132 - -
Prci1g0344 718 Pfam von Willebrand factor type A domain 271 454 IPR002035 -
Prci1g0344 718 SUPERFAMILY vWA-like 266 457 IPR036465 -
Prci1g0344 718 SUPERFAMILY RING/U-box 78 133 - -
Prci1g0344 718 SMART ring_2 83 126 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0344 Prci-Chr1 3575212 3579786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0344 51 127 C3H Transcription Factor Family AT1G57730 32.927 4.93e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0344 - - gmx:100813569 1075.08