Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0338 ATGGAACTTCCTAAACTCAATGACGATCACAATGGAGCCTTCAAGCTTTGCAATAATGATCCTCTGAACTGGGGAATCGCGGCGGAGGCTCTCAAGGGGAGCCATTTGGACGAGGTGAGGCGGATGGTGGAGGTGTACCGGAAGCCGGTTGTGCGCATCGCCGGCAAGTCACTGACGATATCGGAGGTGGCTGCAATTGCCAACCACGACGCCGGCGTGGCCGTGCAGCTTTCGGAGGAGGCTCGTGCCGGCGTGAAGGCTAGCAGCGATTGGGTCATGGAAAGCATGAATAAAGGCACTGACAGCTACGGAGTCACCACCGGCTTCGGTGCCACCTCACACAGGAGAACCAAGCAGGGTGGGGCCCTCCAGAACGAGCTCATCAGGTTCTTGAATGCTGGCATCTTCGGCAATGGCACAGAATCGAGTCACATGTTGCCTCACACAGCCACAAGAGCCGCCATGCTGGTGAGAATCAACACTCTTCTTCAAGGATACTCTGGCATCAGATTTGAGATCTTGGAGGCGATGACCAAGTTTCTTAACCAGAACATAACCCCATGCCTTCCTCTCAGGGGCACCATCACTGCTTCCGGCGACCTCGTACCTCTATCTTACGTTGCCGGCCTCTTGATCGGCCGACCCAACTCCAAATCCATAGGTCCTGATGGCAAGGTCCTCTCTCCTAAAGAAGCCTTTCAACTCGCCGGAATCCATGGAGGTTTCTTTGAACTTCAACCCAAAGAGGGGCTGGCTCTTGTTAACGGTACTGCTGTAGGATCTGCTCTAGCTTCCATGGTTCTTTTCGAGGCAAACATTCTGGGTGTCCTGTCGGAAGTTCTGTCTGCGATTTTCGCAGAGGTTATGCAAGGCAAGCCTGAGTTTACAGACCACTTGACTCATAAACTGAAACACCATCCTGGTCAAATTGAGGCTGCAGCTATAATGGAACACATTTTAGATGGAAGCTCTTATGTTAAAGCAGCACAGAAGCTTCATGAGATTGATCCTCTTCAGAAGCCTAAACAAGATAGGTATGCTCTGAGAACATCTCCTCAGTGGCTTGGACCTCAGATTGAAGTGATCAGACAGGCGACGAAGATGATCGAGAGAGAGATCAATTCTGTGAACGACAATCCATTGATTGACGTTTCAAGAAGCAAGGCACTTCATGGAGGTAACTTCCAGGGCACTCCAATTGGCGTTTCAATGGACAACACTCGCTTGGCCCTTGCTGCTATTGGAAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGACTTTTACAACAATGGCTTGCCTTCAAACCTCACGGCGAGCCGAAACCCGAGCTTGGATTATGGCTTCAAAGGAGCTGAAATCGCCATGGCTTCATACTGTTCAGAGCTCCAATTCCTTGCCAATCCTGTCACAAACCATGTCCAGAGTGCAGAGCAACACAACCAAGATGTGAACTCTCTAGGGCTAATTTCCTCAAGAAAGACAGCTGAAGCTGTGGAGATACTCAAGCTCATGTCCTCCACTTTCTTGATTGCATTATGCCAAGCCATTGATCTGAGGCATTTAGAAGAGAACTTGAAGAGTACTGTGAAGAACACAGTGAGCCAAGTGGCCAAGAGGGTCCTGACAATGGGAAACAATGGTGAATTACTGCCATCAAGATTCTGTGAGAAGGACCTGCTCACAGTGGTGGATCGTGAGCATGTGTTTGCTTACATAGATGATCCCTGCAGTGCAACATACCCATTAATGCAGAAACTGAGGCAGGTTCTGGTTGATCACGCATTGCAAAACGGTGACAGAGAAAAGGACTCTAGCACGTCCATTTTCTTGAAGATCGCAGCTTTTGAGGAAGAACTCAAGACCCTTATGCCCAAAGAAGTAGAAAGTGCGAGGATGGAGGTTGAGAATGGAAACCCTGCAATCCCAAACAGGATCAAAGATTGCAGATCTTATCCAATTTACAGATTTGTGAGGGAAGAACTGGGCACTGATTTGCTAACAGGTGAGAAAGTGAGGTCACCCGGTGAAGAATTTGACAAGGTGTTCACTGCATTGTGCGGAGGAAAGTTGATTGATCCTTTGTTGGAGTGCCTCAAGGAGTGGAATGGAGTTCCTCTACCAATATGCTAG 2136 0.4892 MELPKLNDDHNGAFKLCNNDPLNWGIAAEALKGSHLDEVRRMVEVYRKPVVRIAGKSLTISEVAAIANHDAGVAVQLSEEARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQNELIRFLNAGIFGNGTESSHMLPHTATRAAMLVRINTLLQGYSGIRFEILEAMTKFLNQNITPCLPLRGTITASGDLVPLSYVAGLLIGRPNSKSIGPDGKVLSPKEAFQLAGIHGGFFELQPKEGLALVNGTAVGSALASMVLFEANILGVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKAAQKLHEIDPLQKPKQDRYALRTSPQWLGPQIEVIRQATKMIEREINSVNDNPLIDVSRSKALHGGNFQGTPIGVSMDNTRLALAAIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISSRKTAEAVEILKLMSSTFLIALCQAIDLRHLEENLKSTVKNTVSQVAKRVLTMGNNGELLPSRFCEKDLLTVVDREHVFAYIDDPCSATYPLMQKLRQVLVDHALQNGDREKDSSTSIFLKIAAFEEELKTLMPKEVESARMEVENGNPAIPNRIKDCRSYPIYRFVREELGTDLLTGEKVRSPGEEFDKVFTALCGGKLIDPLLECLKEWNGVPLPIC 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0338 711 Gene3D Fumarase/aspartase (Central domain) 258 705 - -
Prci1g0338 711 Gene3D - 524 645 IPR023144 -
Prci1g0338 711 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 193 209 IPR022313 GO:0016841
Prci1g0338 711 Gene3D - 12 257 IPR024083 -
Prci1g0338 711 CDD PAL-HAL 56 521 IPR001106 -
Prci1g0338 711 NCBIfam phenylalanine ammonia-lyase 20 701 IPR005922 GO:0005737|GO:0006559|GO:0016841
Prci1g0338 711 FunFam Phenylalanine ammonia-lyase 12 257 - -
Prci1g0338 711 PANTHER HISTIDINE AMMONIA-LYASE 18 711 IPR001106 -
Prci1g0338 711 SUPERFAMILY L-aspartase-like 20 711 IPR008948 GO:0003824
Prci1g0338 711 Pfam Aromatic amino acid lyase 58 533 IPR001106 -
Prci1g0338 711 FunFam Phenylalanine ammonia-lyase 524 645 - -
Prci1g0338 711 FunFam Phenylalanine ammonia-lyase 258 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0338 Prci-Chr1 3476492 3481860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0338 20 711 Monolignol Biosynthesis Gene Families AT2G37040 82.514 0.0 1213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0338 K10775 - qsa:O6P43_008636 1239.56