Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0318 ATGGAGTTAGAAGTGAAGTTGGTAGGGAGCATAGATAACTGCTTTGTATCCCTTCCTCTTCCTCTCATCCAACTTCTGCATTCCACACGCTCGGCGCCACTCCCTCATATTCTCGCTCTCGAGCTTCGCTCTCGCTCCGACGATCCATGGGTCGTTGCTTGGTCTGGAGCCACTTCTGCTTCTAATGCCATAGAGGTTGCCCAACATTTCGCAGAATGCATTTCCTTGCCAGATCGTACTAGAGTTCAAGTAAAAGCTGCTTCTAATGTGTCACATGCTTCTCTAATCACAATAGAACCCCATACAGAAGATGACTGGGAAATTTTGGAGCTGAACTCAGAGCAAGCTGAGGCAGCAATCTTAAACCAGGTCCGGATTGTCCATGAAGGAATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACATTCTTTGTCACTTCTGTTATTCCCAAGAAAGCAGTGGTGCAACTCATGCCAGGAACTGAAGTTGCAGTTGCCCCAAAGAGACGTAAAAGAATTTTGGATTCACTTGCAGACTTCCATCCGGGCTCCTATAATAGAGAATACACTACAAAGATGCTGCTCCGTATACAGGATCCAGACAGGCTGTGTCACACAAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAGCTTACTTCTGCTGCTTTTGTTCATCCTGAAACAAGCAAACGGTTCTCACTAAATAGGCTTCAATTGGTCTCCATAGTTCCAAGAATATCCAACAAGAAGGCTAGTAGTACTTCCAGAACGAATTTTATGAAAACAAAAGACAGTTCAACTATTAGGGAAGTTGACTCTGGAAATTTAACTGATGAGAAAGAGTATCGACAAGCAATTGTTTATCTTATGCTTTCAGAGTCAGTGGCTAAGGGGCATGTGATGGTTGCTAAATCTCTTCGTCAGTATTTGAGAGCTGGTCTGCATTCATGGGTCTATTTGAAGGCATGTGATGTTAATTTGGAAAAAGCTATTCCCTCCCTCTCTCTCTCTCCTTGCCACGTCAGAATGTTAAGGCAGAATAATGATGATGAGAATCATATAGATAAGGACAAGCTCACAAGGACTGCATCAGGTGTCTTTGGGGATCTTGTAGATTGGACGATCCATAATGAAGTTATTAATGTTCTTTCAGATGAATCTCATTCTGAAGCAGATGAAGAGTTTGCAAATCAGTCTGAGAATCAAAAGGGGCTACAGCATCTTCTAAGACTATGGTGTATTGCACAACTTGATGCAGTTGCTTCCTTTGCCGGTATGGAGGTTAATGCACTGGTGTTGGGTAGTAAAACTTTACTTCATTTTGAAGTGAGTTACATAAAGCTTGCAACTAATGGAAAGGTTCAGTTAGCTTCTAATTCATCAGAAAACAGAAACAAGACACCAGGAATATTGTTTTTATTGACTATTGGTGAAGATTCTTTGCGTCATGGAAAAATTACTGCATATGAAATTTTACTCGGTGAAAGAAACAAAATGAACAGTATTCAGTCAGATCAACAGCTGTTTAGAAGGCTGAAGTTCACTGATCCCGTCTCTATCCAATCTCTAGAAGATAAAATATCTGAAGAACATATTACTTCAGAATTAACTAGCCTTGACTGGATGGAGGCAACTGCTTCTGATGTTATCAATAGGATGACTGTATTGTTATCTTCTACTTCTGGTATGTGGTTTGATTCATACCACTTACCACTTCCAGGACACATTCTTATATATGGACCTTCAGGCTCTGGCAAAACTGTGCTAGCAAGGACTGTTGCAAAATACTTTGAGATGTTTGAAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAACTAGCTTTGGAGAATGTCCCAATAATCCGGAAAGAAGTTACTAACAACATTATGGAAGCTTTAGATCATGCACCTTCTGTTGTCATCTTTGATGATCTTGATAGCATAATTTCCACCTCTGACTCAGATGGGCCTCAACCCTTAATGTCTGCTGCTGGACTTGCAAGTTTTCTGGCTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCGTGTGGAATTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCTTCAGGGAGGTTTGACTTTCACATACAGCTGCCAACTCCTGCAGCTTCGGAGCGGGGGGCAATGTTGAGGCATGAAATAAAAAGGCGTCACTTGCAATGTGCTGATGACATACTTCTTGATATAGCTGTCAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTGGTTGATAGAGCTGTACATGCTGCTGTTTCTCGCTTCCTCCCATCAAAAGCTGCTCTTAATGGGCATGAGAGTTCTGCTTTACTTATGGAAGATTTCTCTCAAGCGATGCATGATTTTCTTCCAGTTGCAATGCGAGACATTACAAAAACTGCTTCTGATGGTGGACGTTCTGGATGGGATGATGTGGGAGGTCTTGTTGACATTCAAAACACTATTAAGGAGATGATAGAGTTGCCTTCTAAGTTTCCAAAAACTTTTGCGCAAGCTCCTTTGAGGTTACGATCAAATGTCCTTTTGTATGGGCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCCGCCGCCGCTTGTTCACTACGTTTCATATCTGTGAAAGGGCCAGAACTATTGAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCAGCTGCACCATGTCTACTCTTTTTTGACGAATTTGATTCTATTGCCCCCAAGAGAGGACATGACAATACTGGAGTCACTGATCGTGTTGTGAATCAGTTTCTGACTGAGTTAGATGGTGTTGAGATTTTAACAGGTGTATTTGTGTTTGCCGCAACCAGTAGACCGGATTTGCTTGATGCAGCACTTCTGAGACCAGGCAGGTTAGATCGACTCCTATTCTGCGACTTTCCATCTTGGCAGGAGAGGTTTGAAATTCTGACAGTACTTTCCAGAAAGAGTCCAAGTGAACTCTTCTTCCTTTGGGCTGCTCCCTAG 3075 0.4189 MELEVKLVGSIDNCFVSLPLPLIQLLHSTRSAPLPHILALELRSRSDDPWVVAWSGATSASNAIEVAQHFAECISLPDRTRVQVKAASNVSHASLITIEPHTEDDWEILELNSEQAEAAILNQVRIVHEGMRFPLWLHGHTMITFFVTSVIPKKAVVQLMPGTEVAVAPKRRKRILDSLADFHPGSYNREYTTKMLLRIQDPDRLCHTSACVKGVDLHMELTSAAFVHPETSKRFSLNRLQLVSIVPRISNKKASSTSRTNFMKTKDSSTIREVDSGNLTDEKEYRQAIVYLMLSESVAKGHVMVAKSLRQYLRAGLHSWVYLKACDVNLEKAIPSLSLSPCHVRMLRQNNDDENHIDKDKLTRTASGVFGDLVDWTIHNEVINVLSDESHSEADEEFANQSENQKGLQHLLRLWCIAQLDAVASFAGMEVNALVLGSKTLLHFEVSYIKLATNGKVQLASNSSENRNKTPGILFLLTIGEDSLRHGKITAYEILLGERNKMNSIQSDQQLFRRLKFTDPVSIQSLEDKISEEHITSELTSLDWMEATASDVINRMTVLLSSTSGMWFDSYHLPLPGHILIYGPSGSGKTVLARTVAKYFEMFEDILAHIIFVSCSKLALENVPIIRKEVTNNIMEALDHAPSVVIFDDLDSIISTSDSDGPQPLMSAAGLASFLADIIDEYGERRRKSCGIGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPTPAASERGAMLRHEIKRRHLQCADDILLDIAVKCDGYDGYDLEILVDRAVHAAVSRFLPSKAALNGHESSALLMEDFSQAMHDFLPVAMRDITKTASDGGRSGWDDVGGLVDIQNTIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSRPDLLDAALLRPGRLDRLLFCDFPSWQERFEILTVLSRKSPSELFFLWAAP 1024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0318 1024 SUPERFAMILY ADC-like 10 86 IPR009010 -
Prci1g0318 1024 ProSitePatterns AAA-protein family signature. 966 984 IPR003960 GO:0005524|GO:0016887
Prci1g0318 1024 Gene3D - 90 170 - -
Prci1g0318 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 806 IPR027417 -
Prci1g0318 1024 SMART AAA_5 575 727 IPR003593 GO:0016887
Prci1g0318 1024 SMART AAA_5 862 998 IPR003593 GO:0016887
Prci1g0318 1024 FunFam Nuclear valosin-containing protein-like 824 1002 - -
Prci1g0318 1024 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 1012 IPR027417 -
Prci1g0318 1024 Gene3D - 727 806 - -
Prci1g0318 1024 FunFam Peroxisome biogenesis protein 1 532 726 - -
Prci1g0318 1024 Pfam Peroxisome biogenesis factor 1, N-terminal 96 169 IPR015342 GO:0005524|GO:0005777|GO:0007031
Prci1g0318 1024 PANTHER AAA-FAMILY ATPASE 219 1014 - -
Prci1g0318 1024 Gene3D - 527 726 IPR027417 -
Prci1g0318 1024 Pfam ATPase family associated with various cellular activities (AAA) 579 724 IPR003959 GO:0005524|GO:0016887
Prci1g0318 1024 Pfam ATPase family associated with various cellular activities (AAA) 866 993 IPR003959 GO:0005524|GO:0016887
Prci1g0318 1024 FunFam Peroxisome biogenesis factor 1 91 170 - -
Prci1g0318 1024 Gene3D - 827 996 IPR027417 -
Prci1g0318 1024 SUPERFAMILY Cdc48 domain 2-like 92 169 IPR029067 -
Prci1g0318 1024 Gene3D - 997 1014 - -
Prci1g0318 1024 CDD RecA-like_PEX1_r2 837 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0318 Prci-Chr1 3130011 3149320 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0318 576 782 Calmodulin-binding Proteins AT3G56690 28.365 2.29e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0318 K13338 - gmx:100803882 1456.43