Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0315 ATGGAGTTAGAAGTGAAGTTGGTAGGGAGCATAGATAACTGCTTTGTATCCCTTCCTCTTCCTCTCATCCAACTTCTGCATTCCACACGCTCGGCGCCACTCCCTCATATTCTCGCTCTCGAGCTTCGCTCTCGCTCCGACGATCCATGGGTCGTTGCTTGGTCTGGAGCCACTTCTGCTTCTAATGCCATAGAGGTTGCCCAACATTTCGCAGAATGCATTTCCTTGCCAGATCGTACTAGAGTTCAAGTAAAAGCTGCTTCTAATGTGTCACATGCTTCTCTAATCACAATAGAACCCCATACAGAAGATGACTGGGAAATTTTGGAGCTGAACTCAGAGCAAGCTGAGGCAGCAATCTTAAACCAGGTCCGGATTGTCCATGAAGGAATGAGATTTCCTTTGTGGTTGCATGGTCACACAATGATTACATTCTTTGTCACTTCTGTTATTCCCAAGAAAGCAGTGGTGCAACTCATGCCAGGAACTGAAGTTGCAGTTGCCCCAAAGAGACGTAAAAGAATTTTGGATTCACTTGCAGACTTCCATCCGGGCTCCTATAATAGAGAATACACTACAAAGATGCTGCTCCGTATACAGGATCCAGACAGGCTGTGTCACACAAGTGCTTGTGTCAAAGGAGTTGATCTTCATATGGAGCTTACTTCTGCTGCTTTTGTTCATCCTGAAACAAGCAAACGGTTCTCACTAAATAGGCTTCAATTGGTCTCCATAGTTCCAAGAATATCCAACAAGAAGGCTAGTAGTACTTCCAGAACGAATTTTATGAAAACAAAAGACAGTTCAACTATTAGGGAAGTTGACTCTGGAAATTTAACTGATGAGAAAGAGTATCGACAAGCAATTGTTTATCTTATGCTTTCAGAGTCAGTGGCTAAGGGGCATGTGATGGTTGCTAAATCTCTTCGTCAGTATTTGAGAGCTGGTCTGCATTCATGGGTCTATTTGAAGGCATGTGATGTTAATTTGGAAAAAGCTATTCCCTCCCTCTCTCTCTCTCCTTGCCACGTCAGAATGTTAAGGCAGAATAATGATGATGAGAATCATATAGATAAGGACAAGCTCACAAGGACTGCATCAGGTGTCTTTGGGGATCTTGTAGATTGGACGATCCATAATGAAGTTATTAATGTTCTTTCAGATGAATCTCATTCTGAAGCAGATGAAGAGTTTGCAAATCAGTCTGAGAATCAAAAGGGGCTACAGCATCTTCTAAGACTATGGTGTATTGCACAACTTGATGCAGTTGCTTCCTTTGCCGGTATGGAGGTTAATGCACTGGTGTTGGGTAGTAAAACTTTACTTCATTTTGAAGTGAGTTACATAAAGCTTGCAACTAATGGAAAGGTTCAGTTAGCTTCTAATTCATCAGAAAACAGAAACAAGACACCAGGAATATTGTTTTTATTGACTATTGGTGAAGATTCTTTGCGTCATGGAAAAATTACTGCATATGAAATTTTACTCGGTGAAAGAAACAAAATGAACAGTATTCAGTCAGATCAACAGCTGTTTAGAAGGCTGAAGTTCACTGATCCCGTCTCTATCCAATCTCTAGAAGATAAAATATCTGAAGAACATATTACTTCAGAATTAACTAGCCTTGACTGGATGGAGGCAACTGCTTCTGATGTTATCAATAGGATGACTGTATTGTTATCTTCTACTTCTGGTATGTGGTTTGATTCATACCACTTACCACTTCCAGGACACATTCTTATATATGGACCTTCAGGCTCTGGCAAAACTGTGCTAGCAAGGACTGTTGCAAAATACTTTGAGATGTTTGAAGACATCTTAGCACACATAATTTTTGTTTCTTGTTCAAAACTAGCTTTGGAGAATGTCCCAATAATCCGGAAAGAAGTTACTAACAACATTATGGAAGCTTTAGATCATGCACCTTCTGTTGTCATCTTTGATGATCTTGATAGCATAATTTCCACCTCTGACTCAGATGGGCCTCAACCCTTAATGTCTGCTGCTGGACTTGCAAGTTTTCTGGCTGACATTATTGATGAATATGGGGAGAGAAGGCGAAAATCGTGTGGAATTGGACCAATAGCCTTCATAGCTTCTGTACAAGCTCTTGAGAAGATACCACAATCTTTAAGCTCTTCAGGGAGGTTTGACTTTCACATACAGCTGCCAACTCCTGCAGCTTCGGAGCGGGGGGCAATGTTGAGGCATGAAATAAAAAGGCGTCACTTGCAATGTGCTGATGACATACTTCTTGATATAGCTGTCAAATGTGATGGTTATGATGGTTATGATCTGGAAATATTGGTTGATAGAGCTGTACATGCTGCTGTTTCTCGCTTCCTCCCATCAAAAGCTGCTCTTAATGGGCATGAGAGTTCTGCTTTACTTATGGAAGATTTCTCTCAAGCGATGCATGATTTTCTTCCAGTTGCAATGCGAGACATTACAAAAACTGCTTCTGATGGTGGACGTTCTGGATGGGATGATGTGGGAGGTCTTGTTGACATTCAAAACACTATTAAGGAGATGATAGAGTTGCCTTCTAAGTTTCCAAAAACTTTTGCGCAAGCTCCTTTGAGGTTACGATCAAATGTCCTTTTGTATGGGCCTCCTGGTTGTGGCAAAACTCACATAGTTGGTGCTGCCGCCGCCGCTTGTTCACTACGTTTCATATCTGTGAAAGGGCCAGAACTATTGAACAAGTACATTGGTGCTTCTGAACAAGCTGTTAGGGATATATTCTCTAAAGCAGCTGCAGCTGCACCATGTCTACTCTTTTTTGACGAATTTGATTCTATTGCCCCCAAGAGAGGACATGACAATACTGGAGTCACTGATCGTGTTGTGAATCAGTTTCTGACTGAGTTAGATGGTGTTGAGATTTTAACAGGTGTATTTGTGTTTGCCGCAACCAGCTATAAACCTGGAGATGGATGGCTCGTAGAACACTCAACTCTCCTAGGCTTTATCAGTCAAGAAGGATGCGGCTGCTTCCACCTTCTCCATTTCAAGGAAGCTTGA 3024 0.4177 MELEVKLVGSIDNCFVSLPLPLIQLLHSTRSAPLPHILALELRSRSDDPWVVAWSGATSASNAIEVAQHFAECISLPDRTRVQVKAASNVSHASLITIEPHTEDDWEILELNSEQAEAAILNQVRIVHEGMRFPLWLHGHTMITFFVTSVIPKKAVVQLMPGTEVAVAPKRRKRILDSLADFHPGSYNREYTTKMLLRIQDPDRLCHTSACVKGVDLHMELTSAAFVHPETSKRFSLNRLQLVSIVPRISNKKASSTSRTNFMKTKDSSTIREVDSGNLTDEKEYRQAIVYLMLSESVAKGHVMVAKSLRQYLRAGLHSWVYLKACDVNLEKAIPSLSLSPCHVRMLRQNNDDENHIDKDKLTRTASGVFGDLVDWTIHNEVINVLSDESHSEADEEFANQSENQKGLQHLLRLWCIAQLDAVASFAGMEVNALVLGSKTLLHFEVSYIKLATNGKVQLASNSSENRNKTPGILFLLTIGEDSLRHGKITAYEILLGERNKMNSIQSDQQLFRRLKFTDPVSIQSLEDKISEEHITSELTSLDWMEATASDVINRMTVLLSSTSGMWFDSYHLPLPGHILIYGPSGSGKTVLARTVAKYFEMFEDILAHIIFVSCSKLALENVPIIRKEVTNNIMEALDHAPSVVIFDDLDSIISTSDSDGPQPLMSAAGLASFLADIIDEYGERRRKSCGIGPIAFIASVQALEKIPQSLSSSGRFDFHIQLPTPAASERGAMLRHEIKRRHLQCADDILLDIAVKCDGYDGYDLEILVDRAVHAAVSRFLPSKAALNGHESSALLMEDFSQAMHDFLPVAMRDITKTASDGGRSGWDDVGGLVDIQNTIKEMIELPSKFPKTFAQAPLRLRSNVLLYGPPGCGKTHIVGAAAAACSLRFISVKGPELLNKYIGASEQAVRDIFSKAAAAAPCLLFFDEFDSIAPKRGHDNTGVTDRVVNQFLTELDGVEILTGVFVFAATSYKPGDGWLVEHSTLLGFISQEGCGCFHLLHFKEA 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0315 1007 Pfam Peroxisome biogenesis factor 1, N-terminal 96 169 IPR015342 GO:0005524|GO:0005777|GO:0007031
Prci1g0315 1007 SUPERFAMILY ADC-like 10 86 IPR009010 -
Prci1g0315 1007 PANTHER AAA-FAMILY ATPASE 219 973 - -
Prci1g0315 1007 FunFam Peroxisome biogenesis protein 1 532 726 - -
Prci1g0315 1007 FunFam Nuclear valosin-containing protein-like 824 978 - -
Prci1g0315 1007 SMART AAA_5 862 1007 IPR003593 GO:0016887
Prci1g0315 1007 SMART AAA_5 575 727 IPR003593 GO:0016887
Prci1g0315 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 828 974 IPR027417 -
Prci1g0315 1007 Pfam ATPase family associated with various cellular activities (AAA) 866 974 IPR003959 GO:0005524|GO:0016887
Prci1g0315 1007 Pfam ATPase family associated with various cellular activities (AAA) 579 724 IPR003959 GO:0005524|GO:0016887
Prci1g0315 1007 Gene3D - 527 726 IPR027417 -
Prci1g0315 1007 Gene3D - 727 806 - -
Prci1g0315 1007 FunFam Peroxisome biogenesis factor 1 91 170 - -
Prci1g0315 1007 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 562 806 IPR027417 -
Prci1g0315 1007 Gene3D - 90 170 - -
Prci1g0315 1007 SUPERFAMILY Cdc48 domain 2-like 92 169 IPR029067 -
Prci1g0315 1007 Gene3D - 827 974 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0315 Prci-Chr1 3130010 3148378 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0315 789 973 Calmodulin-binding Proteins AT3G56690 42.781 6.79e-40 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0315 K13338 - gmx:100803882 1387.09