LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g0300	ATGGCGGGGAAAGAAGAAAACCGTATATTTGTGGGAGGCTTGTCTTGGGACGTAACGGAGCGTCAGCTCGAGCATGCCTTTAGTCGTTGCGGGAAAGTTATTGAATGCCAGATCATGTTGGAAAGGGACACAGGTCGTCCACGTGGATTTGGGTTTATCACATTTGCAGATCGTAGGGGAATGGAGGATGCAATCAAGGAAATGCATGGACGGGAAATTGGTGACCGCATTATCTCTGTCAACAGGGCGCAGCCCAAGATGGGGTCAGATGACCTAGATCATGGTTACTCATCAGGTGGCAGAGGAAACTATGGGGTGGGAGGCAGGGTCGGACAGGATGACTGCTTCAAATGCGGGCGACCTGGCCACTGGGCCCGAGATTGCCCTCTGGCAGGGGGAGGTCGTGGTGGGGGTTCACTTTCTTCACGACCTAGGTTTGGAGGTGCTGGTGGACATGGGGATCGCCTTGGTGAACGTGATCGATTCATTGATGATCGTTATGATGGAGGACGTTTTGGAGACAGGGAACGCTTTGACAGCCGAGATAACAAATATGGCAACCGTGATCACTATTATAGTGACAGGTACAGGGCTAGCGGAGATCGGTTTGCAAATGACTCGTATGGTGGTTCAGACCGTTACCCACAAAATAGTTATGGGAAAGATAGAGCCTATGACAGGTATGGCAGTGCAAGAAGTAATGATAGGTACGGAAGTGGAGTACCAGCACGAGATCAAGGAAGGAGTTTTAGGGGCGGCAGACGTGGTGGTCCTTATGACCGTCCAAGCCGGGGTGGTCGTCCGTCTTCGTTTGACCGCTACTGA	825	0.5188	MAGKEENRIFVGGLSWDVTERQLEHAFSRCGKVIECQIMLERDTGRPRGFGFITFADRRGMEDAIKEMHGREIGDRIISVNRAQPKMGSDDLDHGYSSGGRGNYGVGGRVGQDDCFKCGRPGHWARDCPLAGGGRGGGSLSSRPRFGGAGGHGDRLGERDRFIDDRYDGGRFGDRERFDSRDNKYGNRDHYYSDRYRASGDRFANDSYGGSDRYPQNSYGKDRAYDRYGSARSNDRYGSGVPARDQGRSFRGGRRGGPYDRPSRGGRPSSFDRY	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g0300	274	MobiDBLite	consensus disorder prediction	133	274	-	-
	Prci1g0300	274	ProSiteProfiles	Zinc finger CCHC-type profile.	115	129	IPR001878	GO:0003676\|GO:0008270
	Prci1g0300	274	Gene3D	-	111	137	-	-
	Prci1g0300	274	MobiDBLite	consensus disorder prediction	248	274	-	-
	Prci1g0300	274	SUPERFAMILY	Retrovirus zinc finger-like domains	99	135	IPR036875	GO:0003676\|GO:0008270
	Prci1g0300	274	SUPERFAMILY	RNA-binding domain, RBD	4	109	IPR035979	GO:0003676
	Prci1g0300	274	SMART	c2hcfinal6	114	130	IPR001878	GO:0003676\|GO:0008270
	Prci1g0300	274	Pfam	Zinc knuckle	115	129	IPR001878	GO:0003676\|GO:0008270
	Prci1g0300	274	Gene3D	-	1	110	IPR012677	-
	Prci1g0300	274	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	7	85	IPR000504	GO:0003723
	Prci1g0300	274	PANTHER	SRA STEM-LOOP-INTERACTING RNA-BINDING PROTEIN, MITOCHONDRIAL	4	266	-	-
	Prci1g0300	274	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	9	78	IPR000504	GO:0003723
	Prci1g0300	274	MobiDBLite	consensus disorder prediction	152	201	-	-
	Prci1g0300	274	SMART	rrm1_1	8	81	IPR000504	GO:0003723
	Prci1g0300	274	FunFam	glycine-rich RNA-binding protein RZ1C	1	112	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g0300	Prci-Chr1	2947665	2953060	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g0300	9	88	C2H2 Transcription Factor Family	AT2G19380	40.000	4.29e-13	67.0

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g0300	-		-	gmx:100809519	374.785