Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0293 ATGCTTCCTCCTATTACCTGCATTCTCTTCTTATGTATCTTGACTTCTTTCTCTTCTTCCATTAAAGCTTCCTTCAACCTCACCTTGCCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCATGAAGTTCACAGGAGAGTCAATGTATCTCTTTCCCGGCAACAACTACTCGCCAGCCCCGGTAAGGACCTCAGTAGTAGCTGTCTCACGGGCAATCCAGTGGACGACTGCTGGCGATGCGACCCTAACTGGGCGGCAAACCGGCAGAAGCTCGCGGACTGTGGCATTGGGTTCGGCCGTGACGCCATGGGCGGGAAAGGAGGCCGGTTCTATGTCGTCACTGACTCTTCCGACTCCGACCCGGCGAACCCAACTCCAGGGACTCTCCGTTTCGGAGTGATCCAAGACGAGCCGCTCTGGATAATCTTCTCCGGCAGCATGACCATCACTCTAAAGCACGAGCTGATCTTCAACAGCTTCAAGACGGTGGACGGCCGCGGCGCCAACGTCCACATAACCGGCCACGGCTGCCTGACGCTCCAGTACGTGTCCAACATCATCATCCACAACGTCCACATCCACCACTGCAAACCCTCAGGCAACACCAACATACGCTCAAGCCCAACCCACGTCGGGCACAGAGGGATATCGGACGGCGACGGAATCTCAATATTCTCCTCCCGGAAGATCTGGATCGACCACTGCTCGCTGTCGTACTGCACGGACGGTCTGGTGGACGCGATAATGGGGTCGACGGGAATAACGATATCGAACAGCCATTTCGCGCACCACGACGAGGTGATGCTGCTGGGTCACAACGACAAGTACTTGCCGGACACGGGGATGCAGGTGACTATAGCGTTCAACCATTTCGGAGAAGGATTGGTTCAGAGGATGCCGAGATGTAGATTGGGATATATCCATGTGGTGAACAACGATTTCACGCAGTGGGAGATGTATGCTATCGGCGGCAGTGCTAACCCCACCATCAACAGCCAGGGTAATCGTTATACTGCGCCGCCCAGTCCTGATGCTAAAGAGGTGACAAAGCGCGTGGACACGCCGGATGGGGAGTGGGCGGATTGGAACTGGCGGACGGAGGGCGACATTATGGTGAACGGCGCCTTCTTCGTGCCGTCGGGCGGCGAACTCAGCCCTCAGTACGCGAAAGCCACCAGCGTCGACCCCAAGTCGGCCGTCCATATCGACCAGCTCACCCTCAACGCCGGCGTGTTCGGCGATCCCAGGGATAACGGAGATCTGTTTCCCGGGTTCGGCGGCGGTGGGACCGTCACCGGCGCCACCGGCACCGGCAGCGTGGGGTCCAGCGGCGGCGACGAAGGGGACTTCTTTGGAATGATATTCAAGGGTAGTAGCAGCGAAGCAGCACCACCCTCGCTCTCCTTTGTTTCAATCTTTTTGTCTCTTCTCATTATTTCCATTTTGTACACATTCGCCAGCCATGGCCTCATATTGTCATCTATACTATGA 1491 0.5641 MLPPITCILFLCILTSFSSSIKASFNLTLPHQHPYPEAVVHEVHRRVNVSLSRQQLLASPGKDLSSSCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRDAMGGKGGRFYVVTDSSDSDPANPTPGTLRFGVIQDEPLWIIFSGSMTITLKHELIFNSFKTVDGRGANVHITGHGCLTLQYVSNIIIHNVHIHHCKPSGNTNIRSSPTHVGHRGISDGDGISIFSSRKIWIDHCSLSYCTDGLVDAIMGSTGITISNSHFAHHDEVMLLGHNDKYLPDTGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPPSPDAKEVTKRVDTPDGEWADWNWRTEGDIMVNGAFFVPSGGELSPQYAKATSVDPKSAVHIDQLTLNAGVFGDPRDNGDLFPGFGGGGTVTGATGTGSVGSSGGDEGDFFGMIFKGSSSEAAPPSLSFVSIFLSLLIISILYTFASHGLILSSIL 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0293 496 FunFam Pectate lyase 71 413 - -
Prci1g0293 496 PANTHER PECTATE LYASE 18-RELATED 31 412 IPR045032 GO:0030570
Prci1g0293 496 SMART amb_all 146 343 IPR002022 -
Prci1g0293 496 Gene3D - 71 413 IPR012334 -
Prci1g0293 496 Pfam Pectate lyase 154 335 IPR002022 -
Prci1g0293 496 SUPERFAMILY Pectin lyase-like 66 388 IPR011050 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Prci1g0293 496 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Prci1g0293 496 MobiDBLite consensus disorder prediction 331 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0293 Prci-Chr1 2805768 2811678 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0293 1 487 Polysaccharide Lyase AT3G53190 62.295 0.0 581
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0293 K01728 - gmx:100808438 754.207