Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0292 ATGCTTCCTCCTATTACCTGCATTCTCTTCTTATGTATCTTGACTTCTTTCTCTTCTTCCATTAAAGCTTCCTTCAACCTCACCTTGCCCCACCAGCATCCTTACCCTGAAGCTGTGGTTCATGAAGTTCACAGGAGAGTCAATGTATCTCTTTCCCGGCAACAACTACTCGCCAGCCCCGGTAAGGACCTCAGTAGTAGCTGTCTCACGGGCAATCCAGTGGACGACTGCTGGCGATGCGACCCTAACTGGGCGGCAAACCGGCAGAAGCTCGCGGACTGTGGCATTGGGTTCGGCCGTGACGCCATGGGCGGGAAAGGAGGCCGGTTCTATGTCGTCACTGACTCTTCCGACTCCGACCCGGCGAACCCAACTCCAGGGACTCTCCGTTTCGGAGTGATCCAAGACGAGCCGCTCTGGATAATCTTCTCCGGCAGCATGACCATCACTCTAAAGCACGAGCTGATCTTCAACAGCTTCAAGACGGTGGACGGCCGCGGCGCCAACGTCCACATAACCGGCCACGGCTGCCTGACGCTCCAGTACGTGTCCAACATCATCATCCACAACGTCCACATCCACCACTGCAAACCCTCAGGCAACACCAACATACGCTCAAGCCCAACCCACGTCGGGCACAGAGGGATATCGGACGGCGACGGAATCTCAATATTCTCCTCCCGGAAGATCTGGATCGACCACTGCTCGCTGTCGTACTGCACGGACGGTCTGGTGGACGCGATAATGGGGTCGACGGGAATAACGATATCGAACAGCCATTTCGCGCACCACGACGAGGTGATGCTGCTGGGTCACAACGACAAGTACTTGCCGGACACGGGGATGCAGGTGACTATAGCGTTCAACCATTTCGGAGAAGGATTGGTTCAGAGGATGCCGAGATGTAGATTGGGATATATCCATGTGGTGAACAACGATTTCACGCAGTGGGAGATGTATGCTATCGGCGGCAGTGCTAACCCCACCATCAACAGCCAGGGTAATCGTTATACTGCGCCGCCCAGTCCTGATGCTAAAGAGGTGACAAAGCGCGTGGACACGCCGGATGGGGAGTGGGCGGATTGGAACTGGCGGACGGAGGGCGACATTATGGTGAACGGCGCCTTCTTCGTGCCGTCGGGCGGCGAACTCAGCCCTCAGTACGCGAAAGCCACCAGCGTCGACCCCAAGTCGGCCGTCCATATCGACCAGCTCACCCTCAACGCCGGCGTGTTCGGCGATCCCAGGGAAGAAAAGGGAGTCTGA 1266 0.5671 MLPPITCILFLCILTSFSSSIKASFNLTLPHQHPYPEAVVHEVHRRVNVSLSRQQLLASPGKDLSSSCLTGNPVDDCWRCDPNWAANRQKLADCGIGFGRDAMGGKGGRFYVVTDSSDSDPANPTPGTLRFGVIQDEPLWIIFSGSMTITLKHELIFNSFKTVDGRGANVHITGHGCLTLQYVSNIIIHNVHIHHCKPSGNTNIRSSPTHVGHRGISDGDGISIFSSRKIWIDHCSLSYCTDGLVDAIMGSTGITISNSHFAHHDEVMLLGHNDKYLPDTGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPPSPDAKEVTKRVDTPDGEWADWNWRTEGDIMVNGAFFVPSGGELSPQYAKATSVDPKSAVHIDQLTLNAGVFGDPREEKGV 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 298 317 IPR018082 -
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 154 170 IPR018082 -
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 94 111 IPR018082 -
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 391 414 IPR018082 -
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 118 143 IPR018082 -
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 218 239 IPR018082 -
Prci1g0292 421 PRINTS Pollen allergen Amb family signature 362 386 IPR018082 -
Prci1g0292 421 FunFam Pectate lyase 71 413 - -
Prci1g0292 421 SMART amb_all 146 343 IPR002022 -
Prci1g0292 421 SUPERFAMILY Pectin lyase-like 66 388 IPR011050 -
Prci1g0292 421 Pfam Pectate lyase 154 335 IPR002022 -
Prci1g0292 421 Gene3D - 71 413 IPR012334 -
Prci1g0292 421 PANTHER PECTATE LYASE 18-RELATED 31 412 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0292 Prci-Chr1 2805764 2811502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0292 20 420 Polysaccharide Lyase AT3G54920 68.215 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0292 K01728 - gmx:100808438 704.901