Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0289 ATGGATGCACCAGAAGAAGTTCTTTCTTTGGGGCCTAAAGACCCAACCCAGATCGCCAAAGGCAAGAGAACCAAAAGGGTTAGGCCACAATCTCCATTGTTGCCTACCATCTCCACAACCGACGAAGATAATAACACCAAGAACTCTACAGCCACCACTTCTTCTGCAGAATTTGAAGAAAATCTTGTCATCATTAACAATAACAGCAGTAGCAGCACAGAGGAGGAGGAGGACATGGCCAATTGCTTGATCCTTCTTGCTCAAGGCCAATCTCGGGATTCTCCCAAACTCGCCGAGGAAGAAGGCAACATGACGACCACGATGATCACGACAACAATGAAGTCTAACAACAACAACAATTATAATTATAACAGCAGTAAGAAATTCATGGAAGCAACCACCATGGGAGCTAACAAAGCAGGTTTTTACGTTTATGAATGCAAGACTTGCAATAAAACCTTCCCTTCTTTTCAAGCACTTGGAGGCCACAGAGCCAGCCACAAGAAGCCTAAGAACTCGCCTCCAATGGCTGTCATTCTAGACAAAGAGAAGAAGAAGGAGCAAGACTTTATTCTCCACAAGAACAATAATGTTAATATGAGTCATAACACGCTTGCTTTTCAGTTTCTGAATAGCGGTGTCAATGGTAATAATAAGAATAAGGTTCATGAGTGTTCTATTTGTGGGGCTGAGTTTGCTTCTGGTCAGGCTTTAGGTGGCCATATGAGAAGGCACAGGGCACCCATTGGGATGACAACGACAATGACAACAACGACCAATACGATGTCGTTGGCTCTCAGCAACAATCCAGTGGGTTTGGAAGCAGATCAACATCATAATGAGGATTATCATCATCAACCCAGAAAGAAAAGAAATGTTTTGTCTTTGGATTTAGATCTTAATCTCCCTGCTCCAGAAGATGATCAGAGTGATTCTTCATCTTTTGCATTTGAAAACAAGCAGCAGCAGCAACAACAAGCACGTCTGGTTTTTTCTTCTTCACCTGCTTTGGTGGATTGTCATTACTGA 1029 0.4286 MDAPEEVLSLGPKDPTQIAKGKRTKRVRPQSPLLPTISTTDEDNNTKNSTATTSSAEFEENLVIINNNSSSSTEEEEDMANCLILLAQGQSRDSPKLAEEEGNMTTTMITTTMKSNNNNNYNYNSSKKFMEATTMGANKAGFYVYECKTCNKTFPSFQALGGHRASHKKPKNSPPMAVILDKEKKKEQDFILHKNNNVNMSHNTLAFQFLNSGVNGNNKNKVHECSICGAEFASGQALGGHMRRHRAPIGMTTTMTTTTNTMSLALSNNPVGLEADQHHNEDYHHQPRKKRNVLSLDLDLNLPAPEDDQSDSSSFAFENKQQQQQQARLVFSSSPALVDCHY 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0289 342 MobiDBLite consensus disorder prediction 301 321 - -
Prci1g0289 342 Pfam C2H2-type zinc finger 222 248 - -
Prci1g0289 342 Pfam C2H2-type zinc finger 144 170 - -
Prci1g0289 342 ProSitePatterns Zinc finger C2H2 type domain signature. 147 167 IPR013087 -
Prci1g0289 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 145 172 IPR013087 -
Prci1g0289 342 ProSitePatterns Zinc finger C2H2 type domain signature. 225 245 IPR013087 -
Prci1g0289 342 MobiDBLite consensus disorder prediction 31 55 - -
Prci1g0289 342 MobiDBLite consensus disorder prediction 306 321 - -
Prci1g0289 342 ProSiteProfiles Zinc finger C2H2 type domain profile. 223 245 IPR013087 -
Prci1g0289 342 PANTHER ZINC FINGER PROTEIN ZAT5 68 323 - -
Prci1g0289 342 SMART c2h2final6 145 167 IPR013087 -
Prci1g0289 342 SMART c2h2final6 223 245 IPR013087 -
Prci1g0289 342 Gene3D Classic Zinc Finger 202 269 - -
Prci1g0289 342 Gene3D Classic Zinc Finger 121 201 - -
Prci1g0289 342 MobiDBLite consensus disorder prediction 1 55 - -
Prci1g0289 342 SUPERFAMILY beta-beta-alpha zinc fingers 144 245 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0289 Prci-Chr1 2729635 2731137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0289 1 342 C2H2 Transcription Factor Family AT5G04390 41.538 4.64e-71 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1g0289 zf-C2H2_6 9.3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0289 - - pcin:129295754 607.831