Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0268 ATGAACTGTCTTTGGCAGCTTCCCTTATCCTCGGTTTTGCCTTTCCAATGCTTTAGAAGCCACCAGAGGATGCCTCTTTGCTCTGCCAAATCCTTGAGAATGTCCAATACTTGTGATCCAAATCGAAGCATGGCAGTGAAGTGTGCTTCTGGTTCCATGTCCAGTGCAGGGACAAATAGTGCTAATGTGAAAGAAGAGGAGAAATCCGAGGCATATAGTCAAAATATGACTGAAGCTATGGGTGCTGTTTTAACTTATAGGCACGAATTGGGGATGAACTACAACTTCATTCGTCCAGACTTAATAGTGGGATCATGCTTGCAGACTCCTGAAGACGTTGACAAACTTCGTGCAATAGGAGTGAAAACTATATTTTGCTTGCAACAAGACCCTGACCTAGAATACTTTGGAGTTGATATCACTGCCATTCGAGAATATGCCAGGTCTTGCAATGACATTCAACACTTGCGGGCTGAGATAAGGGACTTTGATGCATTTGACTTGAGGATGAGGCTTTCAACTGTAGTTAGCAAATTGTACAAGGCCATAAATTGCAATGGGGGTGTGACATATATACATTGCACAGCTGGACTTGGGAGAGCTCCAGCTGTTGCGTTGGCTTATATGTTTTGGGTTCAGGGATATAAACTTGATGAGGCTTATAGATTGCTCCTGAGCAAAAGACCATGCTTCCCAAAGTTGGATGCGATAAAAAGTGCAACAGCTGATATTCTTACAGGCTTCAGAAAAAAGTTCGTCACATTGACGTGGGAAGGCAACAATTGCTCTTCAGTTGAAATTTCTGGACTTGATATTGGATGGGGCCAGAGAATGCCCCTGCATTATGATGACAAACAGGGTTTGTGGGTTCTCAAGAGGGAATTACCTGTAGGACACTACGAGTACAAGTACGTTGTTGATGGGGAATGGACGTGCAATCAGTATGAACTAGTGAGCTCTCCCAACAAAGATGGCCATGTCAATAATTATCTGCAAGTCATTGACGATACAGACAGTGTTGATGCCTCCCTAAGGAAGAGGTTGATGGGTGATGATCCTGATCTGACAAAGGATGAACGGCTGACAATAAGACAGTTTCTTGAAGCTCTTACTGATGAAGAGCCATGA 1128 0.4353 MNCLWQLPLSSVLPFQCFRSHQRMPLCSAKSLRMSNTCDPNRSMAVKCASGSMSSAGTNSANVKEEEKSEAYSQNMTEAMGAVLTYRHELGMNYNFIRPDLIVGSCLQTPEDVDKLRAIGVKTIFCLQQDPDLEYFGVDITAIREYARSCNDIQHLRAEIRDFDAFDLRMRLSTVVSKLYKAINCNGGVTYIHCTAGLGRAPAVALAYMFWVQGYKLDEAYRLLLSKRPCFPKLDAIKSATADILTGFRKKFVTLTWEGNNCSSVEISGLDIGWGQRMPLHYDDKQGLWVLKRELPVGHYEYKYVVDGEWTCNQYELVSSPNKDGHVNNYLQVIDDTDSVDASLRKRLMGDDPDLTKDERLTIRQFLEALTDEEP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0268 375 Gene3D Immunoglobulins 248 338 IPR013783 -
Prci1g0268 375 SUPERFAMILY E set domains 251 333 IPR014756 -
Prci1g0268 375 SMART dsp_5 93 243 IPR020422 GO:0006470|GO:0008138
Prci1g0268 375 Gene3D Protein tyrosine phosphatase superfamily 86 366 IPR029021 -
Prci1g0268 375 Pfam Dual specificity phosphatase, catalytic domain 146 231 IPR000340 GO:0008138|GO:0016311
Prci1g0268 375 CDD E_set_AMPKbeta_like_N 253 333 - -
Prci1g0268 375 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 235 IPR029021 -
Prci1g0268 375 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 229 IPR000387 GO:0016311|GO:0016791
Prci1g0268 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 86 267 - -
Prci1g0268 375 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 26 373 - -
Prci1g0268 375 Pfam Glycogen recognition site of AMP-activated protein kinase 253 335 IPR032640 -
Prci1g0268 375 FunFam Phosphoglucan phosphatase DSP4, chloroplastic 248 338 - -
Prci1g0268 375 CDD DSP_laforin-like 92 239 IPR045204 GO:0019203
Prci1g0268 375 ProSiteProfiles Dual specificity protein phosphatase domain profile. 93 250 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0268 Prci-Chr1 2509870 2517934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0268 92 374 Protein tyrosine phosphatase (PTP) family AT3G52180 69.611 9.94e-151 425
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0268 - - zju:107413253 592.038