Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0231 ATGGGCAATTTTGGTCGTTATGATATCTTCTGGGTTAACTTGGTGATGACTGTGATTGGATTTGCGATGAGCACTATGTTCATCGTTTTCGTTTGCACTAGACTTATATGTGCTCGAATTCACTTGAATGCTTCTCGCCGATCCCTCCTTATTGCTTCCAGATCCGATCTGAGTCTGCTGGAGCGGGGATTTCATGGTCTTGAACCCACATCAGTAGAGAACTTCCCAACGAAGAAGTACAGTGATGGATGCTTTGCTGCTGCAGAAAATTCTCAATGTACAGTTTGTCTCTCTGAATACCAAGGTGAGGATGTACTGCGCATCCTCCCATATTGTGGACACTTCTTCCATGCAACCTGCATAGACCTATGGCTGCAGCAGCATTCGACATGCCCTGTATGTCGAATCTCTTTACGCAAATCATCGGAGAGAAAGCGCGTAATGCAGCCATTATTTAGTGCCGTTGTTCAATCTAATTTTGGCGTGGAATCTATTCCCACTCATCCTTTTCACTGTATGATGGCTAATGATAATGAGTTATCATCAAGAAACCTGGACATGCATGGTGTGAACCCTGTACAAGAGGATCATTTTGCACCTGAAGGTGGTGGAACCGTTGGTACAGAGAATGCCACCAATATAAGTCATGGTGATCAGTCCATGAAAGATACAGGAAAGAAGCATTTAGACAGCACATCAATAATCCCCTTAAGCTAA 717 0.4379 MGNFGRYDIFWVNLVMTVIGFAMSTMFIVFVCTRLICARIHLNASRRSLLIASRSDLSLLERGFHGLEPTSVENFPTKKYSDGCFAAAENSQCTVCLSEYQGEDVLRILPYCGHFFHATCIDLWLQQHSTCPVCRISLRKSSERKRVMQPLFSAVVQSNFGVESIPTHPFHCMMANDNELSSRNLDMHGVNPVQEDHFAPEGGGTVGTENATNISHGDQSMKDTGKKHLDSTSIIPLS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0231 238 FunFam E3 ubiquitin-protein ligase ATL6 57 141 - -
Prci1g0231 238 CDD RING-H2_EL5-like 92 135 - -
Prci1g0231 238 SUPERFAMILY RING/U-box 87 140 - -
Prci1g0231 238 PANTHER OS11G0150450 PROTEIN 12 192 - -
Prci1g0231 238 MobiDBLite consensus disorder prediction 196 238 - -
Prci1g0231 238 SMART ring_2 93 134 IPR001841 -
Prci1g0231 238 Pfam Ring finger domain 92 135 IPR001841 -
Prci1g0231 238 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Prci1g0231 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 141 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0231 Prci-Chr1 2180687 2183917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0231 12 138 Rapid Response to Elicitors AT2G35000 34.328 1.35e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0231 - - pcin:129309455 481.485