Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0230 ATGGGCAATTTTGGTCGTTATGATATCTTCTGGGTTAACTTGGTGATGACTGTGATTGGATTTGCGATGAGCACTATGTTCATCGTTTTCGTTTGCACTAGACTTATATGTGCTCGAATTCACTTGAATGCTTCTCGCCGATCCCTCCTTATTGCTTCCAGATCCGATCTGAGTCTGGTAAACCTGGAGCGGGGATTTCATGGTCTTGAACCCACATCAGTAGAGAACTTCCCAACGAAGAAGTACAGTGATGGATGCTTTGCTGCTGCAGAAAATTCTCAATGTACAGTTTGTCTCTCTGAATACCAAGGTGAGGATGTACTGCGCATCCTCCCATATTGTGGACACTTCTTCCATGCAACCTGCATAGACCTATGGCTGCAGCAGCATTCGACATGCCCTGTATGTCGAATCTCTTTACGCAAATCATCGGAGAGAAAGCGCGTAATGCAGCCATTATTTAGTGCCGTTGTTCAATCTAATTTTGGCGTGGAATCTATTCCCACTCATCCTTTTCACTGTATGATGGCTAATGATAATGAGTTATCATCAAGAAACCTGGACATGCATGGTGTGAACCCTGTACAAGAGGATCATTTTGCACCTGAAGGTGGTGGAACCGTTGGTACAGAGAATGCCACCAATATAAGTCATGGTGATCAGTCCATGAAAGATACAGGAAAGAAGCATTTAGACAGCACATCAATAATCCCCTTAAGCTAA 723 0.4371 MGNFGRYDIFWVNLVMTVIGFAMSTMFIVFVCTRLICARIHLNASRRSLLIASRSDLSLVNLERGFHGLEPTSVENFPTKKYSDGCFAAAENSQCTVCLSEYQGEDVLRILPYCGHFFHATCIDLWLQQHSTCPVCRISLRKSSERKRVMQPLFSAVVQSNFGVESIPTHPFHCMMANDNELSSRNLDMHGVNPVQEDHFAPEGGGTVGTENATNISHGDQSMKDTGKKHLDSTSIIPLS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0230 240 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Prci1g0230 240 CDD RING-H2_EL5-like 94 137 - -
Prci1g0230 240 PANTHER OS11G0150450 PROTEIN 12 194 - -
Prci1g0230 240 SMART ring_2 95 136 IPR001841 -
Prci1g0230 240 MobiDBLite consensus disorder prediction 198 240 - -
Prci1g0230 240 Pfam Ring finger domain 94 137 IPR001841 -
Prci1g0230 240 FunFam E3 ubiquitin-protein ligase ATL6 58 143 - -
Prci1g0230 240 SUPERFAMILY RING/U-box 89 142 - -
Prci1g0230 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 143 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0230 Prci-Chr1 2180685 2183917 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0230 12 140 Rapid Response to Elicitors AT2G35000 35.821 3.48e-20 86.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0230 - - pcin:129309455 490.345