Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0212 ATGTATTGCAATTTTTTGGAGCATGCAGCAGAGTATGTGAAGCAGGCGGTTCATGAGGATGATGCTGGAAACTATAAGAAGGCATTTACTCTTTATATGAATGCATTGGAATACCTAAAGACCCATTTGAAGTATGAGAAGAATCCCAACATCAAGGAAATAATAACCGAAAAATTTGTTCAGTACTTGAGGAGGGCAGAGGAAATACGTGCCATTCTTGACAAAAGAGAAAATGGGCCCAACTTGTCTGGCGGCGCAACTCAATCTAATGTTGTGAGGCCAAATACAAAGCCAAAGAGTGGAGAAGCTGGAGATAAGGATGATCCGGAGAAAGCAAAGCTGAAGGCTGGTCTTGATTCTGTAATAATCAAAGAGAAACCAAATGTCAAGTGGAGTGATGTTGCTGGGCTTGAGAGCGCCAAACAGGCATTACAAGAGGCTGTGATATTGCCTGTTAAGTTCCCTCAATTTTTCACGGGGAAGAGACAACCATGGAGAGCATTTCTATTGTATGGTCCCCCAGGAACAGGGAAGTCATATTTAGCAAAGGCTGTAGCTACAGAGGCAGACTCAACATTCTTCAGTGTCTCATCATCAGATCTAGTTTCTAAATGGATGGGCGAAAGTGAAAAGCTGGTTTCCAGTCTTTTCCAAATGGCTCGTGAAAGTGCTCCTTCAATTATTTTTATTGATGAAATAGATTCTTTATGTGGCCAACGAGGTGAAGGCAATGAAAGTGAAGCATCTAGACGCATCAAAACTGAACTTCTTGTACAAATGCAGGGTGTGGGTAAAGAAGATCAGAAAGTTCTCATTCTTGCAGCCACCAATACTCCTTATGCTCTGGATCAGGCCATCCGACGACGTTTTGACAAGCGAATATACATACCTCTCCCAGACATGAAGGCCAGGCAGCATATGTTCAAGGTGCATCTTGGAGATACCCCACATAACTTGACTGAAAAAGATTTTGAGGAATTGGCTCTGAAAACAGATGGATTTTCTGGTTCAGACATTTCTGTTTGTGTTAAGGATGTACTTTTTGAACCAGTTCGTAAAACCAGGGATTCCAAATTCTTTAGGAAAACCTCAAAGGGAATGTGGATCCCTTGTGAGCCTACTGAAAAAGGAGCTGTTAACATTAACCTGCAAGAACTTGATGCACAAGGACTTGCTTCAAAGATTGTGCCACCACCGATAACAAGAGAAGATTTTGATAAAGTATTAAGAAGGCAGAAACCAACAGTAAGTAAAGCTGATCTCGAGGTGCATGAGAGATTTACCCAGGAGTTTGGAGAGGAGGGTTGA 1308 0.4197 MYCNFLEHAAEYVKQAVHEDDAGNYKKAFTLYMNALEYLKTHLKYEKNPNIKEIITEKFVQYLRRAEEIRAILDKRENGPNLSGGATQSNVVRPNTKPKSGEAGDKDDPEKAKLKAGLDSVIIKEKPNVKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRQPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGKEDQKVLILAATNTPYALDQAIRRRFDKRIYIPLPDMKARQHMFKVHLGDTPHNLTEKDFEELALKTDGFSGSDISVCVKDVLFEPVRKTRDSKFFRKTSKGMWIPCEPTEKGAVNINLQELDAQGLASKIVPPPITREDFDKVLRRQKPTVSKADLEVHERFTQEFGEEG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0212 435 FunFam Vacuolar protein sorting-associated protein 4 127 307 - -
Prci1g0212 435 FunFam Suppressor of K+ transport growth defect 1 6 75 - -
Prci1g0212 435 PANTHER AAA DOMAIN-CONTAINING 23 433 - -
Prci1g0212 435 Gene3D - 127 423 IPR027417 -
Prci1g0212 435 CDD RecA-like_VPS4 126 296 - -
Prci1g0212 435 Gene3D - 4 75 - -
Prci1g0212 435 Gene3D - 300 415 - -
Prci1g0212 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 430 IPR027417 -
Prci1g0212 435 MobiDBLite consensus disorder prediction 81 96 - -
Prci1g0212 435 Pfam MIT (microtubule interacting and transport) domain 6 70 IPR007330 -
Prci1g0212 435 SUPERFAMILY MIT domain 3 91 IPR036181 -
Prci1g0212 435 Pfam Vps4 C terminal oligomerisation domain 368 432 IPR015415 -
Prci1g0212 435 Pfam ATPase family associated with various cellular activities (AAA) 169 298 IPR003959 GO:0005524|GO:0016887
Prci1g0212 435 ProSitePatterns AAA-protein family signature. 270 289 IPR003960 GO:0005524|GO:0016887
Prci1g0212 435 SMART AAA_5 164 300 IPR003593 GO:0016887
Prci1g0212 435 SMART smart 2 79 IPR007330 -
Prci1g0212 435 MobiDBLite consensus disorder prediction 77 111 - -
Prci1g0212 435 FunFam vacuolar protein sorting-associated protein 4A 300 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0212 Prci-Chr1 1940563 1945245 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0212 163 356 Calmodulin-binding Proteins AT3G56690 36.224 4.46e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0212 K12196 - csav:115706151 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g0212 1 1940563 1945245 Prci1g0212 1 1940563 1945245 ECH