Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0209 ATGGATGTTCTATTGATTTCGCCTTCGTTAAATGAATCTATGGCCTTTTCCATTCTCAAACCTCATACTATCCAACTTCCCCACCTTCCCTTAAACCCCAGATTGCGCAATTCATCGAATAACACAACCCCTTTCAAGCTTTCTTCTTCCTCCTCGTCTTCCTGTTTCTGTAAGTGTTTCTGTTCTAGAATAGCGGCAACTTCAGTAACTACTTACACTCCCTTGGCTTCTGCCACCACTGAGAACCGCCACTGGATAGTAATCATGGAAAAGCCTCCACAACGGGTTGATTCCAAGCAGCAAGTTATTGATTATTATGTTCAAACTCTGCAAAGAGTTGTTGGCAGTGAGAAAGAGGCTCAAATGTGTATTTACCATGCTTCGTGGGTTACCCACTACGGTTTTTGTTGCGACATCGATGAAGAAACTTCTTCCCAGCTCGCTCGTATACCTGGCGTCATTTCGGTTAGGCCTGATCTGGATTTCAGCTCTCCGGAAAAGGATTATAGATCATCAAATGGGTGGGCAGATAATTTGTCAAAGCTACAAACTGGGGCCACTTTGTTGTTCCCTGCTGGGAATTCAAAGCATTGGCTTGTTCGAATGCATAAACCTGGGGTTGGGGTTGTTACGAAGGCTCAGGTTGTGGATTATTATGCTCAAATTCTAGCCAAAGTCATGGGAAATGAGAAGGATGCACAAATGTGTATATACCATGTGTCTTGGAAAACCAACTTTGGCTTTTGTTGTGAACTTGATGAGGATTGTGCACAACAGCTAACTGGCGTGCCTGGTGTATTATCAGTTCAGCCGGATAATAATTTTGAGTCAGAAATTAAAGATTATGCAGGTGTGAACCTTGAAAACAGTTTGAATGTGCTGAACTCTTCTGAAGCAAGTGAGGCAACTCCTTTGAAAACCAAAAAGCTTTTTGTGACAGGCCTATCATTTTATACATCTGAGAAAACCTTACGTGCAGCGTTTGAAGGCTTCGGTGAGCTTGTTGAAGTTAAAGTTATTATGGATAAAATTTCTAAAAGGTCCAAGGGTTATGCATTTGTGGAATACACAACAGAGGAGGCTGCAGCTGCAGCATTGAAAGAGATGAATGGCAAGATTATCAATGGATGGATGATAGTTGTGGATGTTGCCAAGCCTAGTCCGCAAAAATATAATAGGGGTCGTGCCAGACCTGTGTAG 1200 0.425 MDVLLISPSLNESMAFSILKPHTIQLPHLPLNPRLRNSSNNTTPFKLSSSSSSSCFCKCFCSRIAATSVTTYTPLASATTENRHWIVIMEKPPQRVDSKQQVIDYYVQTLQRVVGSEKEAQMCIYHASWVTHYGFCCDIDEETSSQLARIPGVISVRPDLDFSSPEKDYRSSNGWADNLSKLQTGATLLFPAGNSKHWLVRMHKPGVGVVTKAQVVDYYAQILAKVMGNEKDAQMCIYHVSWKTNFGFCCELDEDCAQQLTGVPGVLSVQPDNNFESEIKDYAGVNLENSLNVLNSSEASEATPLKTKKLFVTGLSFYTSEKTLRAAFEGFGELVEVKVIMDKISKRSKGYAFVEYTTEEAAAAALKEMNGKIINGWMIVVDVAKPSPQKYNRGRARPV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0209 399 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 187 377 IPR039206 GO:0016554
Prci1g0209 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
Prci1g0209 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
Prci1g0209 399 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 67 162 IPR037045 -
Prci1g0209 399 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 191 276 IPR037045 -
Prci1g0209 399 Gene3D - 288 398 IPR012677 -
Prci1g0209 399 SUPERFAMILY RNA-binding domain, RBD 298 396 IPR035979 GO:0003676
Prci1g0209 399 SMART rrm1_1 309 382 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0209 Prci-Chr1 1934864 1939925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0209 305 399 C2H2 Transcription Factor Family AT2G19380 35.052 3.17e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0209 - - qsa:O6P43_004903 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Prci1g0209 1 1934864 1939925 Prci1g0209 1 1934864 1939925 ECH