Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0193 ATGTTCAAGAACCAGTATGCACAACAAAAACAGGTCTCCTTAAGCATAACCATGTATGAGTACATCGATGATGAGTCCAAAAGAAAACTATCGTATAAGAAAAGAAAAGGAAGTGTCGTAAAAAAAATACGTGAGCTCAGCATCCTTTGTGGTGTAGATGCTGGGGCAGTCGTTTACAGTGGCCCCTCTGATCCTCAACCAGAGGTTTGGCCGGACCATGAAGGTGTCGAGCAGGTGATTGAGAGGTGTCACTGTCAAGCTAGGCCCGCCTTGGAGGGGACCTTGAGCAGGGAGGAACCAATACAGAGTAGAATTAACAAAGGGAAAGAACTTCTGATGAAAAGGCGAGAGGAAAATCGTGGAGAAGAGATTTACCAACTCATGATCCTCTCTTTGGCAGGGAAAGCGATGCCCAGTCTTACAGATTGGCTTGATACGAAGATGGCAGTTGAGCAGAGCTTGAAGAAACTTAACTGGAAGGAAGGAGAGTCTGGCAACGTGGACTTGTCCATTCCACCTTCTGCAATGTCAGACAAATTGCAAGTTTTCCGAGAGGGGATGTTGACAGACCAATTTCAGCAGTTCAGCATAGACACTACCAGAGAGGCAGAAGCCTATTTTCCAGCTGCAACAACATCTGAAGGGCTTTTCATCAATAAAGAGAATGATCAACATGTGCAGTATTGCAGGGGCATTGGGAATGTGGGAGATTATATGGGCATTGGTACATGTGAGACTCTGCAGCCATCTAGCAGTGCCAACCCATATATTCCAACTCTACCAACATCTGAAGGATTTTTCATCAATAAAGAGAATGATCAACATGTGCAGTATTGCAGTGGCATAGGAGACATGGAAAATTATATGGGTGTTAGTACATACGAGACGCTGCAGCCATCCAGCAGTGTTAACCCATATATTCCAACTCTACCAACATCGGAAGGATTTTTCATCAATGAAAAGAATGATCAACGTGTGCAGTACTGCAGTGGCATAGGAAACATGGAAGACTATATGGATATTGGTGCATATGAGACGCTGCAGCCATCTAGCAGTGCCAACCCATATATTCCGACTCTACCAACATCTGAAGGGTTTGCCTTTAATGTACAGAATGAAAGGCTGACCGACCAACTTCCGCAGTATGGCATGGACATAGGACATGTGGAAGATTATATGGGAATTGGTGCATATGAGATGCCACAACATTCTAACAACGCCAATTACCCCTATGTTCCATAG 1242 0.4444 MFKNQYAQQKQVSLSITMYEYIDDESKRKLSYKKRKGSVVKKIRELSILCGVDAGAVVYSGPSDPQPEVWPDHEGVEQVIERCHCQARPALEGTLSREEPIQSRINKGKELLMKRREENRGEEIYQLMILSLAGKAMPSLTDWLDTKMAVEQSLKKLNWKEGESGNVDLSIPPSAMSDKLQVFREGMLTDQFQQFSIDTTREAEAYFPAATTSEGLFINKENDQHVQYCRGIGNVGDYMGIGTCETLQPSSSANPYIPTLPTSEGFFINKENDQHVQYCSGIGDMENYMGVSTYETLQPSSSVNPYIPTLPTSEGFFINEKNDQRVQYCSGIGNMEDYMDIGAYETLQPSSSANPYIPTLPTSEGFAFNVQNERLTDQLPQYGMDIGHVEDYMGIGAYEMPQHSNNANYPYVP 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0193 413 CDD MADS_SRF_like 20 86 IPR033897 GO:0000981|GO:0000987|GO:0045944
Prci1g0193 413 PANTHER MADS BOX PROTEIN 16 143 - -
Prci1g0193 413 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 62 IPR002100 GO:0003677|GO:0046983
Prci1g0193 413 Gene3D - 24 104 IPR036879 GO:0003677|GO:0046983
Prci1g0193 413 ProSiteProfiles MADS-box domain profile. 20 60 IPR002100 GO:0003677|GO:0046983
Prci1g0193 413 SMART madsneu2 7 72 IPR002100 GO:0003677|GO:0046983
Prci1g0193 413 SUPERFAMILY SRF-like 20 85 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0193 Prci-Chr1 1824466 1825753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0193 22 136 Type I MADS-box Gene Family AT1G65300 40.517 7.38e-18 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Prci1g0193 SRF-TF 2.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0193 - - pcin:129319512 847.04