Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0170 ATGACACAGTGGACTCGCCGCGAGGACAAGCTCCTCGAGCAAGCTATCGTAATGTTTCCTGATGATTCCCCCAACCGCTGGGAGAAGATTGCTGACGCCGTCCCCGGCGCCACCGTCGATTTGGTCTTGCAACGATACCACGATCTTCTACACGATGTCGCCGAGATTGATGCTGGTCGCATCCCGATTCCGGCCTTCCCTGACTTTCCCTCCGATGCTGAGCCCTCCTCCTCCGATTGGAACTCCGCTAGTCAAATTTCTTTTAACTCGAAGCCACCCAAGAATTCTGATACCGACAGAAAGAAGGGCACGCCTTGGACTGAGGAAGAACACAGGCTATTCCTAAGAGGATTGGAGAAATATGGCAAGGGAGATTGGAGGAGCATTTCTAGAAATGTTGTGGTGACTAGAACACCAACTCAGGTAGCTAGCCATGCTCAGAAATATTTTAATCGCCAAAGGGAAAAAACAAAGAAAGAAAGGAAAAGAGCAAGCATCCATGATATCACAACTGCTGACACCAACCTGGAACTTGTAGATCAAAACCAGGTCGCTCCTTCAAGCCTTCAAACCCAAGTTGCCTCTTCAGGTCTTCCAGTGCATCAGTCATCGCCAATGCTCCAGTTTAACCCACAAAATCCTTCAATTGATCCAACCCTTGGGTTTGGGTACCCAAACTATGCTTTTCCTATCTAG 696 0.4885 MTQWTRREDKLLEQAIVMFPDDSPNRWEKIADAVPGATVDLVLQRYHDLLHDVAEIDAGRIPIPAFPDFPSDAEPSSSDWNSASQISFNSKPPKNSDTDRKKGTPWTEEEHRLFLRGLEKYGKGDWRSISRNVVVTRTPTQVASHAQKYFNRQREKTKKERKRASIHDITTADTNLELVDQNQVAPSSLQTQVASSGLPVHQSSPMLQFNPQNPSIDPTLGFGYPNYAFPI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0170 231 CDD SANT 105 150 IPR001005 -
Prci1g0170 231 SMART sant 102 152 IPR001005 -
Prci1g0170 231 SMART sant 1 52 IPR001005 -
Prci1g0170 231 FunFam transcription factor MYB1R1 104 155 - -
Prci1g0170 231 ProSiteProfiles SANT domain profile. 101 154 IPR017884 -
Prci1g0170 231 Pfam Myb-like DNA-binding domain 105 150 IPR001005 -
Prci1g0170 231 SUPERFAMILY Homeodomain-like 100 154 IPR009057 -
Prci1g0170 231 Gene3D - 1 63 - -
Prci1g0170 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Prci1g0170 231 MobiDBLite consensus disorder prediction 74 93 - -
Prci1g0170 231 MobiDBLite consensus disorder prediction 94 108 - -
Prci1g0170 231 Gene3D - 104 155 - -
Prci1g0170 231 SUPERFAMILY Homeodomain-like 3 56 IPR009057 -
Prci1g0170 231 CDD SANT 4 50 IPR001005 -
Prci1g0170 231 MobiDBLite consensus disorder prediction 67 108 - -
Prci1g0170 231 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Prci1g0170 231 FunFam Transcription factor SRM1 1 63 - -
Prci1g0170 231 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 98 154 IPR017930 -
Prci1g0170 231 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 153 IPR006447 GO:0003677
Prci1g0170 231 ProSiteProfiles Myb-like domain profile. 98 150 IPR001005 -
Prci1g0170 231 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 2 210 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0170 Prci-Chr1 1656730 1659321 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Prci1g0170 Myb_DNA-binding 2.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0170 - - pvy:116123302 242.662