Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0154 ATGAGCACCAACATATCGGAGGCGCACGGCTCTAATCCGCCGTTTAGCGGATACGCCTATTACTCCATCGGACTATCCATCGGGATTCTCACTCTCTTCGCGTTCATTACCGTAGTCTTGTACTTCTGCTCTCGCAGAATCGCCATGAACCCTTCACAACTGTCACAGGTTAGAAACTCAAGCTTTGGTTTACAGACCATTAGCGTCGTAGATCCTCCGCCTCAGTTAGGTGTGGATGACGCGACCTTGAAGAGTTATCCGGTGCTGTTATACTCGGAGGTGAAGCGCGATCGGAAAGGCGGTGCCGCTGGTGATTCTGCGGCAACTTGTTCGATATGCTTGGGCGATTTCAGTGACAGTGAGTGGTTGAGGGAGTTGCCGGATTGCCGTCACTTGTTTCACCAGAAGTGCATCGATTTGTGGCTGAGGATGAACTCTTCGTGTCCGCTGTGCCGGACCTCGCCGCTTCCAACGCCGGTTTCAACTCCGCTTGCTGAAGTTGCTCCCTTGGCAAGATCAAGGGATTGA 528 0.5265 MSTNISEAHGSNPPFSGYAYYSIGLSIGILTLFAFITVVLYFCSRRIAMNPSQLSQVRNSSFGLQTISVVDPPPQLGVDDATLKSYPVLLYSEVKRDRKGGAAGDSAATCSICLGDFSDSEWLRELPDCRHLFHQKCIDLWLRMNSSCPLCRTSPLPTPVSTPLAEVAPLARSRD 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0154 175 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 166 IPR045899 -
Prci1g0154 175 CDD RING-H2_EL5-like 110 152 - -
Prci1g0154 175 SUPERFAMILY RING/U-box 85 157 - -
Prci1g0154 175 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Prci1g0154 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 156 IPR013083 -
Prci1g0154 175 SMART ring_2 110 151 IPR001841 -
Prci1g0154 175 FunFam E3 ubiquitin-protein ligase ATL6 69 157 - -
Prci1g0154 175 Pfam Ring finger domain 109 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0154 Prci-Chr1 1419766 1420608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0154 21 173 C3H Transcription Factor Family AT2G35910 50.000 1.27e-42 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0154 - - pcin:129304115 353.984