LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1g0123	ATGGCTCCTTCAAAGGTGGATGCCGCCAAGAAGGCTGATCCTAAAGGACACGCCTTGAAGGCTGCCAAAGCATTGAAGTCAGGTGGCCCAGTGTTTAAGAAGAAAGCTAAGAAAATCAGGACATCTGTCACATTTCATCGTCCAAAGACATTGAAGAAAGACAGGAACCCCAAGTATCCTCGCATCAGTGCACCACCAAGGAACAAATTGGATCATTATCAAATTCTTAAATACCCTCTTACTACCGAATCTGCTATGAAAAAGATTGAGGATAACAACACCCTTGTTTTCATTGTTGATCTCCGTGCTGACAAGAAGAAGATTAGAGATGCAGTGAAGAAAATGTATGATATTCAGGCCAAAAAAGTCAATACTCTGATCAGGCCTGATGGAACAAAGAAAGCATATGTTAGGTTGACACCAGATTATGACGCTTTGGATGTGGCCAACAAAATCGGCATTATTTAA	468	0.4145	MAPSKVDAAKKADPKGHALKAAKALKSGGPVFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIRDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII	155

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1g0123	155	Pfam	Ribosomal protein L23	75	137	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Prci1g0123	155	FunFam	60S ribosomal protein L23a	35	155	-	-
	Prci1g0123	155	Gene3D	-	36	155	IPR012677	-
	Prci1g0123	155	NCBIfam	50S ribosomal protein L23	79	155	IPR019985	GO:0003735\|GO:0005840\|GO:0006412
	Prci1g0123	155	PANTHER	60S RIBOSOMAL PROTEIN L23A	7	155	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Prci1g0123	155	SUPERFAMILY	Ribosomal proteins S24e, L23 and L15e	72	148	IPR012678	GO:0003735\|GO:0005840\|GO:0006412
	Prci1g0123	155	Hamap	50S ribosomal protein L23 [rplW].	75	155	IPR013025	GO:0003735\|GO:0005840\|GO:0006412
	Prci1g0123	155	Pfam	Ribosomal protein L23, N-terminal domain	15	65	IPR005633	-
	Prci1g0123	155	ProSitePatterns	Ribosomal protein L23 signature.	133	148	IPR001014	GO:0019843

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Prci1g0123	Prci-Chr1	1009525	1011728	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1g0123	1	155	Cytoplasmic Ribosomal Protein Gene Family	AT2G39460	86.452	4.10e-68	201

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1g0123	K02893		-	gmx:100777933	278.485