Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0090 ATGGGGTTGAAACCTACAAAGGAGGGGCCACCCAAAATTGAAAACCTGAGTTTACATCATCACTTGATCAATTACCTCACAAAAAATCTATATATTCGTAATTTGGTATCCAAGAAACGGCGGAGAATGCTCATTGCTGGATATGATCTTGACATGTCATATATCACAGATCGATTACTAGCAATGTCATTTCCTGCAGAACGTATGCGAGCAATGTATAGAAATCCTCTCTGGCAGGTCAAGTCTGTACTGGATATGAGACATCATGAGCACTATAAGATATATAATCTTTGTATAGAAGAAAATTATGATCCAGCACACTTTTATGGTCGTGTGGAAGCATATCCCTTTGATGACAACCATGTACCACCTCTTGAAATGATCAAGAACTTCTGTGAAAGTGTGCATTCATGGTTATCAAGTGACTCAAAAAATATTGCTGTCATTCATTGCATGGCAGGGAAGGGCAGAACTGGCTTGATGGTATCTTCATACCTAGTTTATAGCGGTATGTTGACAGATGAGGCTCTTCAATTGTATGCCGATAGGCGGACAACCAATAATGAAGGAGTATCGATACCAAGCCAACGTCGTTATGTAGGGTACTGGGAAAGTATGCTATCTGTTCCTAGAGGCACTGGTAATGAGCCAATAAATGTGAGCTTGCCTCAAACATGTAGCAGAGAATTGCGGCGAATCCGGCTTTATGATACGCTTAATGTTGAAGCGATCTTCTTTGTGATCTCAGAGATGCAGAAGGTTCCTAATCAAGTCTACTGTCCATCAGTGGAGATTATTAGGAGCAGCTGCAGACAAATTAAGAAAGGATATCAGCAAAACTACAGTCCTTGCTATTATCTCTCTTATGTCGAAGGTGATGAAGATGGAAAAGAATTAAGATCAGAGGAACCTCGTGTTGTAGTCCAAATGGACACTGAGGATCCGGCAATCTACCAAAAATCTTGTCTGGACCATTATTTTGACAAACCAGTCCAACTTACTGGAGATGTCCGTGTCATATTCTACCAAAAATTGATGGGAAGCCGACTTTTCTACTGCTGTTTTAACACAGCTTTTGTTAGGAATGGCTTGCTACAGCTGAAGATGAAAGACTTGGACAAAGTAGGGAATAAAGGAAGATCAATCTGTGGGCCATCCTTTTGCTTAGAACTTCTGTTTGGCCCTGCCAATATGAAACACTCGGCAACTCCATCTACTGATGAGGATTCTGGGGATGAATATCCTTAA 1248 0.4087 MGLKPTKEGPPKIENLSLHHHLINYLTKNLYIRNLVSKKRRRMLIAGYDLDMSYITDRLLAMSFPAERMRAMYRNPLWQVKSVLDMRHHEHYKIYNLCIEENYDPAHFYGRVEAYPFDDNHVPPLEMIKNFCESVHSWLSSDSKNIAVIHCMAGKGRTGLMVSSYLVYSGMLTDEALQLYADRRTTNNEGVSIPSQRRYVGYWESMLSVPRGTGNEPINVSLPQTCSRELRRIRLYDTLNVEAIFFVISEMQKVPNQVYCPSVEIIRSSCRQIKKGYQQNYSPCYYLSYVEGDEDGKELRSEEPRVVVQMDTEDPAIYQKSCLDHYFDKPVQLTGDVRVIFYQKLMGSRLFYCCFNTAFVRNGLLQLKMKDLDKVGNKGRSICGPSFCLELLFGPANMKHSATPSTDEDSGDEYP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0090 415 Gene3D Protein tyrosine phosphatase superfamily 28 209 IPR029021 -
Prci1g0090 415 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 302 395 IPR035892 -
Prci1g0090 415 Gene3D - 286 398 - -
Prci1g0090 415 Pfam C2 domain of PTEN tumour-suppressor protein 314 393 IPR014020 -
Prci1g0090 415 CDD PTP_PTEN 51 204 IPR045101 GO:0016791
Prci1g0090 415 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 207 IPR029021 -
Prci1g0090 415 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Prci1g0090 415 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 129 184 IPR000387 GO:0016311|GO:0016791
Prci1g0090 415 ProSiteProfiles C2 tensin-type domain profile. 241 396 IPR014020 -
Prci1g0090 415 SMART PTEN_C2_2 248 395 IPR014020 -
Prci1g0090 415 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 28 210 - -
Prci1g0090 415 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 31 408 - -
Prci1g0090 415 ProSiteProfiles Phosphatase tensin-type domain profile. 41 210 IPR029023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0090 Prci-Chr1 776862 782869 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0090 1 410 Protein tyrosine phosphatase (PTP) family AT5G39400 65.865 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0090 K01110 - gmx:100809938 671.389