Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0088 ATGGCGGCCGCAAAACCCCAGAGGACTCCTCAAGAAGTTGAGGATAATCTCAGGAAAATTTTTCTCGTTTCCCTCACTGATGCCACGGGAAACGATCCAAGAGTCGTTTACTTGGAATTGACAGCAGCTGAGATTCTCAGCGAAGGCAGCGATTTGAGGCTTTCACGGGACTTGATGGAACGGGTTCTGATTGATCGGCTTTGTGGGAGTTTCTCTTCAGCTGAATCGCATTTTCAGTACTTAATCAGTAGCTATCAACGAGCACACGATGAGGGGAAGAAAATTGCGAACATGAAAGATAAAAGTTTGAGGGGTGAGATGGAATCCGTGGTGAAACAAGCAAAGAAGCTGTGTGTATCATATTGCAGAATTCATCTAGCGAATCCTGACATGTTTCAAAATGGAAATTCTAGTGCAAGTAAACACCAGAACTCACCATTGTTACCCCTTATCCTCTCTGAGGTCGGTGGCACCATCAATGGCTTCGGTGGGAGTGGCAGTGCTGGAGGAGTTAAAAGCCCGCCTGGGTTTCTGGAGGAATTTTTCAGGGACTCAGACTTTGATAATTTGGATCCAATATTGAAAGGTTTGTACGAGGAGTTGAGGGGTAGTGTGATGAAAGTTTCGGCTCTTGGGAATTTCCAAGACTTTTTGAGGGCATTGCTGTTTCTGGTTAGATTTCCTATTGGTGCAAAGTCTCTCGTGAGCCACAGGTGGTGGATTCCTAAAGGAGTTTACATGAATGGACGTGCAATTGAAATGACTAGCATTTTAGGCACTTTCTTTCATATTAGCGCTCTTCCTGATCAAGACTTATTCAGGAGCCAGCCTGACGTTGGACAGCAGTGCTTTTCAGATGCTTCTACTCGCCGTCCATCTGATTTGCTATCTTCATTCACCACAATTAAAACCGTTATGAATAACTTATATGATGGCCTGAGTGAGGTTCTCCTCATTCTTCTGAAAAGTACAGATACTCGTGAAAATGTACTTGAGTATCTTGCTGAGGTAATCAATAAGAATGCATTCAGGGCTCATATGCAGGTTGATCTGATGACCTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCTGTTATGCTTCGCCTCTGTGAGCCATTTTTAGATGCAAATTTAACAAAAAGGGATAAAATTGATGCAAAATATGTCTACTATTCAGAGCGTCTGGATTTAAGAGGGTTGACTGCCCTTCATGCATCTTCCGAGGAAGTTGCTGAATGGATAAAGAGTAATGATGGTGAGAAACGCTTGCAACAATCTCAGGAAGCTACCAGTTCTGGTAGTAACAATGCTGGTGATCCTTCAAATGCAATACCTGCATCACATGCTGAAAAGACAAAATACCCATTTATTTGCGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTAGGCCTCTTGAAAGCATTTTCTGACTTCAAACACGTAGTTCAGGATCTTTCTAGGTGTGAAGATTCTCTGTCAACACTCAAAGACATGCAGCCACAGTCATCGTCTCCTCAGTTGGAGTTAGATATAGCTCGACTTGAGAAAGAAATTGAGCTTTACTCACAGGAAAAGCTTTGTTATGAAGCTCAGATATTGCGGGATAACACATTTATTCAAAATGCTCTTTCCTTCTACCGCCTGATGATTGTTTGGTTGGTTGGCTTGGTTGGGGGATTTAAGATGCCTCTACCATCAACTTGCCCAATGGAATTTGCTTCGATGCCTGAGCATTTTGTAGAAGATGCAATGGAATTGCTCATATTTGCTTCTCGGATTCCAAAAGCCTTAGATGGGGTTGTTCTGGATGAATTCATGAACTTTGTAATAATGTTCATGGCCAGTCCTAAATTTATCAAAAACCCATATTTGAGAGCAAAGATGGTTGAAGTCTTGAATTGCTGGATGCCCCGTAGGAGTGGATCATCTGCTACAGCCACTCTATTTGAAGGGCACCAGCTGTCTCTTGAGTATCTTGTGGGCAATCTTTTGAAGCTTTACGTTGACATTGAGTTTACTGGTTCTCACACTCAGTTTTATGACAAGTTTAACATCCGCCATAATATTGCCGAACTGCTAGAATACCTCTGGCAGGTCCCTAGTCATCGTAATGCTTGGAGACAGATTGCTAAAGAAGAGGAAAAGGGTGTCTATCTAAATTTCTTAAACTTCCTGATCAATGATAGTATTTATCTTCTAGATGAAAGTTTGAACAAAATTCTTGAGCTAAAAGAATTGGAAGCTGAGATGTCGAATACCACTGAATGGGAGCGACGATCAGCTCAAGAAAGGCAGGAGAGGACACGGCTATTCCACTCGCAAGAAAATATTATTCGAATAGATATGAAGTTGGCAAATGAAGATGTTAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTCCTTCCTGAGATGGTTGAAAGAGTGGCCAGCATGCTCAATTACTTTCTTCTGCAACTGGTGGGTCCCCAAAGAAAATCACTTAGTCTGAAAGATCCTGAAAAGTATGAATTCCGTCCCAAGCATTTGCTTAAGCAGATTGTGCACATTTATGTTCATCTAGCCAGAGGTGATACCAACAACATCTTCCCGTCTGCCATCTCTAAGGATGGTCGATCATACAATGATCAGCTGTTTAGTGCTGCAGCAGATGTCCTTAGAAGAATAGGCGAGGATGGAAGAGTTATACATGAATTTGTTGAACTCGGTGCTAAAGCAAAAGTCGCTGCTTCTGAGGCCATGGATACTGAAGCTACTTTAGGGGAAATACCTGATGAATTCCTCGATCCAATTCAGTACACTTTGATGAAAGATCCAGTTATCTTACCTTCTTCAAGGATCACAGTTGATCGTCCTGTCATTCAGAGGCATCTTCTTAGTGATAATACCGACCCATTCAACCGTTCTCATCTTACCGCCGATATGCTGATTTCTAATGATGAACTCAAGGCAAGAATTGAGGAGTTTGTGAGGTCCCGGGAGCTGAAGAAACATGATAAAGGCCAAGGTATTCAGAGTAGCAAGGGCACAATTCAGGCCACGAATGGGGAAATGTTGATTGATTAG 3081 0.4232 MAAAKPQRTPQEVEDIXLRKIFLVSLTDATGNDPRVVYLELTAAEILSEGSDLRLSRDLMERVLIDRLCGSFSSAESHFQYLISSYQRAHDEGKKIANMKDKSLRGEMESVVKQAKKLCVSYCRIHLANPDMFQNGNSSASKHQNSPLLPLILSEVGGTINGFGGSGSAGGVKSPPGFLEEFFRDSDFDNLDPILKGLYEELRGSVMKVSALGNFQDFLRALLFLVRFPIGAKSLVSHRWWIPKGVYMNGRAIEMTSILGTFFHISALPDQDLFRSQPDVGQQCFSDASTRRPSDLLSSFTTIKTVMNNLYDGLSEVLLILLKSTDTRENVLEYLAEVINKNAFRAHMQVDLMTCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVYYSERLDLRGLTALHASSEEVAEWIKSNDGEKRLQQSQEATSSGSNNAGDPSNAIPASHAEKTKYPFICECFFMTARVLNLGLLKAFSDFKHVVQDLSRCEDSLSTLKDMQPQSSSPQLELDIARLEKEIELYSQEKLCYEAQILRDNTFIQNALSFYRLMIVWLVGLVGGFKMPLPSTCPMEFASMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFVIMFMASPKFIKNPYLRAKMVEVLNCWMPRRSGSSATATLFEGHQLSLEYLVGNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWQVPSHRNAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTTEWERRSAQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHIYVHLARGDTNNIFPSAISKDGRSYNDQLFSAAADVLRRIGEDGRVIHEFVELGAKAKVAASEAMDTEATLGEIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQRHLLSDNTDPFNRSHLTADMLISNDELKARIEEFVRSRELKKHDKGQGIQSSKGTIQATNGEMLID 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0088 1027 Pfam Ubiquitin elongating factor core 259 912 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Prci1g0088 1027 SMART Ubox_2 932 995 IPR003613 GO:0004842|GO:0016567
Prci1g0088 1027 MobiDBLite consensus disorder prediction 425 444 - -
Prci1g0088 1027 CDD RING-Ubox_UBE4A 931 999 - -
Prci1g0088 1027 SUPERFAMILY RING/U-box 921 1001 - -
Prci1g0088 1027 MobiDBLite consensus disorder prediction 423 448 - -
Prci1g0088 1027 FunFam Ubiquitin conjugation factor e4 a 928 1006 - -
Prci1g0088 1027 ProSiteProfiles U-box domain profile. 928 1002 IPR003613 GO:0004842|GO:0016567
Prci1g0088 1027 Pfam U-box domain 929 999 IPR003613 GO:0004842|GO:0016567
Prci1g0088 1027 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 928 1008 IPR013083 -
Prci1g0088 1027 PANTHER UBIQUITINATION FACTOR E4 5 1005 IPR045132 GO:0000151|GO:0030433|GO:0034450
Prci1g0088 1027 Coils Coil 507 534 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0088 1 1027 U-box Gene Family AT5G15400 75.191 0.0 1602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0088 K10597 - gmx:100811444 1702.57