Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0078 ATGGATAACACAGAAAAAGTAAACTTTTCTGAATTCTTGTCTGAGCTAATAGGTTTGGCTGATGAGGTTGCTTCCTCTGCTCAGAACTGCGAAATTGAGACGAATGCTTTTCCTGAGTTCGCCATCTTAGTAGAGGAATTGGCACCAATTTTCAGTGATTTGAGAGACAAAAGCACGATCATGGACAAGCCACCTATTAGAAAATCGTTGGAATCTCTTAAGAATGAGCTTAGGCGTGCTAAGGCTTTGACAATAAGCCTTAATCAGAAACATCTTATTAAACAGATTGAGGGCATAACTCATGATCTTGGTCGATCATTGGGGCTGCTACTTGTGTCCAGCCTTGAGGTGTCCGCTGATTCTAGAGAAAAGATCAGTGCCTTGCAGAGAAAGTTGATGAGTGCAAGATTTGGTGGAAATACAAGTTCAACTTCGAGTTCAAGATCAGAATTTGTCAGTGATGTGAAGCTTGAAGGGGAAATAGAAGAAGAAATAGTCAACTTCACTATTGACGATATTATATTGCAACTTAAACATGGTAATGATCGAGAATTCACAGTTGCACTTTTGAGACTAAAGGAATTCATCAGAGATGGAAAAGCAGATTATGATTTAATTGATGAGGAGGTGCTTGTTGCCATTCTAATGAATCGACTAGGTTCAAGTAAGGCTGACAATAGGCTGAACATCCTTCAACTACTAAGAAGCATAGCTTTTGGCAATGATGAAAAGAAGGAGACGATGGCAGATATTGAGTTTTTATCAACTGTGGTGAAGTCTCTGTCAAGGGAAGCAGAAGAAAGGAGAGAAGCAGTGGGGCTTTTACTAGACCTCTCTAAGCTTCCTTCAGTTAAGCGACAAATAGGAAGAATTCAAGGTTGTATTGTTATGCTAGTCTCTATTCTTAATGGAGATGATCCTGTTGCTTCACATGATTCATCAAAATTGTTGGATATATTGTCTAGTAATTCTCAAAATGCCCTTCATATGGCAGAGGCCGGTTACTTCAAGCCACTAGTGCAGTGTTTGAAGGAAGGGTCTGACATGACTAAGATCCTCATGGCAACAGCACTGTCTAGATTAGAGCTCACCGATCACAGCAGATTCACACTTGGAGAAGATGGGGTGATTGAACCTTTAGTCAACATGTTTACTTCTGGGAAGCTTGAGTCCAAGTTGTCTGCCCTAAATGCACTGCAAAATTTGTCAAGCTTGACAGAAAATGCACAGCGTTTAACCAGATCTGGAATTGTGGTATCTCTGCTTCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTTCGGGAGCCTGTATCAGCTATTCTTGCAAGAATTGCTCAGTCAGAGCCCTTACTTATTAATCCAGAAGCAGCTCAGCAGATCCTCTCACTTTTGAATCTTTCCAGTCCAGTAATTCAGAGTCATTTATTAGAAGCACTAGATAGCATTGCTGCTCATCCAGGTGCATCGAAAGTGAGAAAAAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTTTTACCTTTTCTGATGGAAACAAACCCTAAAATACGGAGCAGGGCCTTGCAATTGCTGTACACTCTTTCCAAAGATCTAACAGAAGAGTTGACAGAACATCTTGATGACACCCATCTTTTTAATATTGTCAATGTTATCTCATCATCAACATCTGAGAGTGAAAAGACTGTTGCTGTTGGTTTACTGAGTAATCTTCCCGTTAGTGATAAGAAAGTGACAGATGTATTGAAGAGGGCGAATTTGCTCCCTATTTTAATATCCATTATGTCTTCAAGCACGGGAAGTAATTCACCCGCAACTAGTGGCTTAGTGCAGAGTGTTGTGGGTGTTATAATCCGGTTTACAAATCCTTCTGACAAGAAACTACAACTTCTCTCAGCAGAGCAAGGGGTAATCCCTTTGCTCATAAAACTGCTCTCAACTGGCTCACCAATCACGAAATCCAAGGCTGCAATCTCACTTGCTCAATTATCCCAGAATTCTGTGTCTCTTGGGAGGTCTAGAAAATCAAGATGGTTTTGTGTTCCTCCCTCAGCCGATGCCCATTGTGAAGTTCATGACAGTAATTGCTTTGTGAAAAGCACATTTTGTTTAGTCAAAGCCGGTGCTGTTCCTCCACTTATCCAAATATTAGAAGATAAAGAGGAGGAAGCTGTTGAAGCTGCTTTGATTGCCCTTTCAACTCTCTTGCAAGATGAAATATGGGAAGGTGGTGTCAACTTCATAGTTAAATCCTCAGGTGTTCAGGCTATTATAAAGATTTTAGAAGTGGGGGACGTAAAGATTCAAGAGAAAGCACTCTGGATGTTGGAGAGGATATTCAGGGTTGAAGAACATAGAGTTAAATTTGGAGAATCTGCTCAGGTTGTCCTTGTTGATCTTGCTCAGAAGAGTGATTTTAGATTGAAGTCAGCAGTTGCAAAAGTATTGGCAGAGCTAGAGCTCTTACAAGTTCAATCAAGTTACTTCTAG 2490 0.4052 MDNTEKVNFSEFLSELIGLADEVASSAQNCEIETNAFPEFAILVEELAPIFSDLRDKSTIMDKPPIRKSLESLKNELRRAKALTISLNQKHLIKQIEGITHDLGRSLGLLLVSSLEVSADSREKISALQRKLMSARFGGNTSSTSSSRSEFVSDVKLEGEIEEEIVNFTIDDIILQLKHGNDREFTVALLRLKEFIRDGKADYDLIDEEVLVAILMNRLGSSKADNRLNILQLLRSIAFGNDEKKETMADIEFLSTVVKSLSREAEERREAVGLLLDLSKLPSVKRQIGRIQGCIVMLVSILNGDDPVASHDSSKLLDILSSNSQNALHMAEAGYFKPLVQCLKEGSDMTKILMATALSRLELTDHSRFTLGEDGVIEPLVNMFTSGKLESKLSALNALQNLSSLTENAQRLTRSGIVVSLLQLLFSVTSVLMTLREPVSAILARIAQSEPLLINPEAAQQILSLLNLSSPVIQSHLLEALDSIAAHPGASKVRKKMKEKGALQLLLPFLMETNPKIRSRALQLLYTLSKDLTEELTEHLDDTHLFNIVNVISSSTSESEKTVAVGLLSNLPVSDKKVTDVLKRANLLPILISIMSSSTGSNSPATSGLVQSVVGVIIRFTNPSDKKLQLLSAEQGVIPLLIKLLSTGSPITKSKAAISLAQLSQNSVSLGRSRKSRWFCVPPSADAHCEVHDSNCFVKSTFCLVKAGAVPPLIQILEDKEEEAVEAALIALSTLLQDEIWEGGVNFIVKSSGVQAIIKILEVGDVKIQEKALWMLERIFRVEEHRVKFGESAQVVLVDLAQKSDFRLKSAVAKVLAELELLQVQSSYF 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0078 829 Gene3D - 316 674 IPR011989 -
Prci1g0078 829 Gene3D - 186 315 IPR011989 -
Prci1g0078 829 SUPERFAMILY ARM repeat 373 784 IPR016024 -
Prci1g0078 829 SUPERFAMILY ARM repeat 169 425 IPR016024 -
Prci1g0078 829 Coils Coil 395 415 - -
Prci1g0078 829 Gene3D - 682 826 IPR011989 -
Prci1g0078 829 SMART arm_5 405 448 IPR000225 GO:0005515
Prci1g0078 829 SMART arm_5 323 363 IPR000225 GO:0005515
Prci1g0078 829 SMART arm_5 241 280 IPR000225 GO:0005515
Prci1g0078 829 SMART arm_5 364 404 IPR000225 GO:0005515
Prci1g0078 829 SMART arm_5 625 665 IPR000225 GO:0005515
Prci1g0078 829 SMART arm_5 697 737 IPR000225 GO:0005515
Prci1g0078 829 SMART arm_5 741 781 IPR000225 GO:0005515
Prci1g0078 829 SMART arm_5 490 530 IPR000225 GO:0005515
Prci1g0078 829 Coils Coil 70 90 - -
Prci1g0078 829 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 169 829 - -
Prci1g0078 829 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 375 417 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0078 Prci-Chr1 681696 685944 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0078 188 829 U-box Gene Family AT1G20780 29.662 7.55e-52 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0078 K08332 - gmx:100791453 1124.38