Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0075 ATGTTTACTTCTCACCATGTAGATCAGTTTCACGCACAGATGGATAACACAGAAAAAGTAAACTTTTCTGAATTCTTGTCTGAGCTAATAGGTTTGGCTGATGAGGTTGCTTCCTCTGCTCAGAACTGCGAAATTGAGACGAATGCTTTTCCTGAGTTCGCCATCTTAGTAGAGGAATTGGCACCAATTTTCAGTGATTTGAGAGACAAAAGCACGATCATGGACAAGCCACCTATTAGAAAATCGTTGGAATCTCTTAAGAATGAGCTTAGGCGTGCTAAGGCTTTGACAATAAGCCTTAATCAGAAACATCTTATTAAACAGATTGAGGGCATAACTCATGATCTTGGTCGATCATTGGGGCTGCTACTTGTGTCCAGCCTTGAGGTGTCCGCTGATTCTAGAGAAAAGATCAGTGCCTTGCAGAGAAAGTTGATGAGTGCAAGATTTGGTGGAAATACAAGTTCAACTTCGAGTTCAAGATCAGAATTTGTCAGTGATGTGAAGCTTGAAGGGGAAATAGAAGAAGAAATAGTCAACTTCACTATTGACGATATTATATTGCAACTTAAACATGGTAATGATCGAGAATTCACAGTTGCACTTTTGAGACTAAAGGAATTCATCAGAGATGGAAAAGCAGATTATGATTTAATTGATGAGGAGGTGCTTGTTGCCATTCTAATGAATCGACTAGGTTCAAGTAAGGCTGACAATAGGCTGAACATCCTTCAACTACTAAGAAGCATAGCTTTTGGCAATGATGAAAAGAAGGAGACGATGGCAGATATTGAGTTTTTATCAACTGTGGTGAAGTCTCTGTCAAGGGAAGCAGAAGAAAGGAGAGAAGCAGTGGGGCTTTTACTAGACCTCTCTAAGCTTCCTTCAGTTAAGCGACAAATAGGAAGAATTCAAGGTTGTATTGTTATGCTAGTCTCTATTCTTAATGGAGATGATCCTGTTGCTTCACATGATTCATCAAAATTGTTGGATATATTGTCTAGTAATTCTCAAAATGCCCTTCATATGGCAGAGGCCGGTTACTTCAAGCCACTAGTGCAGTGTTTGAAGGAAGGGTCTGACATGACTAAGATCCTCATGGCAACAGCACTGTCTAGATTAGAGCTCACCGATCACAGCAGATTCACACTTGGAGAAGATGGGGTGATTGAACCTTTAGTCAACATGTTTACTTCTGGGAAGCTTGAGTCCAAGTTGTCTGCCCTAAATGCACTGCAAAATTTGTCAAGCTTGACAGAAAATGCACAGCGTTTAACCAGATCTGGAATTGTGGTATCTCTGCTTCAACTTCTTTTCTCTGTAACATCTGTGCTCATGACTCTTCGGGAGCCTGTATCAGCTATTCTTGCAAGAATTGCTCAGTCAGAGCCCTTACTTATTAATCCAGAAGCAGCTCAGCAGATCCTCTCACTTTTGAATCTTTCCAGTCCAGTAATTCAGAGTCATTTATTAGAAGCACTAGATAGCATTGCTGCTCATCCAGGTGCATCGAAAGTGAGAAAAAAAATGAAGGAAAAAGGTGCACTTCAGCTTCTTTTACCTTTTCTGATGGAAACAAACCCTAAAATACGGAGCAGGGCCTTGCAATTGCTGTACACTCTTTCCAAAGATCTAACAGAAGAGTTGACAGAACATCTTGATGACACCCATCTTTTTAATATTGTCAATGTTATCTCATCATCAACATCTGAGAGTGAAAAGACTGTTGCTGTTGGTTTACTGAGTAATCTTCCCGTTAGTGATAAGAAAGTGACAGATGTATTGAAGAGGGCGAATTTGCTCCCTATTTTAATATCCATTATGTCTTCAAGCACGGGAAGTAATTCACCCGCAACTAGTGGCTTAGTGCAGAGTGTTGTGGGTGTTATAATCCGGTTTACAAATCCTTCTGACAAGAAACTACAACTTCTCTCAGCAGAGCAAGGGGTAATCCCTTTGCTCATAAAACTGCTCTCAACTGGCTCACCAATCACGAAATCCAAGGCTGCAATCTCACTTGCTCAATTATCCCAGAATTCTGTGTCTCTTGGGAGGTCTAGAAAATCAAGATGGTTTTGTGTTCCTCCCTCAGCCGATGCCCATTGTGAAGTTCATGACAGTAATTGCTTTGTGAAAAGCACATTTTGTTTAGTCAAAGCCGGTGCTGTTCCTCCACTTATCCAAATATTAGAAGATAAAGAGGAGGAAGCTGTTGAAGCTGCTTTGATTGCCCTTTCAACTCTCTTGCAAGATGAAATATGGGAAGGTGGTGTCAACTTCATAGTTAAATCCTCAGGTGTTCAGGCTATTATAAAGATTTTAGAAGTGGGGGACGTAAAGATTCAAGAGAAAGCACTCTGGATGTTGGAGAGGATATTCAGGGTTGAAGAACATAGAGTTAAATTTGGAGAATCTGCTCAGGTTGTCCTTGTTGATCTTGCTCAGAAGAGTGATTTTAGATTGAAGTCAGCAGTTGCAAAAGTATTGGCAGAGCTAGAGCTCTTACAAGTTCAATCAAGTTACTTCTAG 2529 0.4053 MFTSHHVDQFHAQMDNTEKVNFSEFLSELIGLADEVASSAQNCEIETNAFPEFAILVEELAPIFSDLRDKSTIMDKPPIRKSLESLKNELRRAKALTISLNQKHLIKQIEGITHDLGRSLGLLLVSSLEVSADSREKISALQRKLMSARFGGNTSSTSSSRSEFVSDVKLEGEIEEEIVNFTIDDIILQLKHGNDREFTVALLRLKEFIRDGKADYDLIDEEVLVAILMNRLGSSKADNRLNILQLLRSIAFGNDEKKETMADIEFLSTVVKSLSREAEERREAVGLLLDLSKLPSVKRQIGRIQGCIVMLVSILNGDDPVASHDSSKLLDILSSNSQNALHMAEAGYFKPLVQCLKEGSDMTKILMATALSRLELTDHSRFTLGEDGVIEPLVNMFTSGKLESKLSALNALQNLSSLTENAQRLTRSGIVVSLLQLLFSVTSVLMTLREPVSAILARIAQSEPLLINPEAAQQILSLLNLSSPVIQSHLLEALDSIAAHPGASKVRKKMKEKGALQLLLPFLMETNPKIRSRALQLLYTLSKDLTEELTEHLDDTHLFNIVNVISSSTSESEKTVAVGLLSNLPVSDKKVTDVLKRANLLPILISIMSSSTGSNSPATSGLVQSVVGVIIRFTNPSDKKLQLLSAEQGVIPLLIKLLSTGSPITKSKAAISLAQLSQNSVSLGRSRKSRWFCVPPSADAHCEVHDSNCFVKSTFCLVKAGAVPPLIQILEDKEEEAVEAALIALSTLLQDEIWEGGVNFIVKSSGVQAIIKILEVGDVKIQEKALWMLERIFRVEEHRVKFGESAQVVLVDLAQKSDFRLKSAVAKVLAELELLQVQSSYF 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0075 842 Coils Coil 83 103 - -
Prci1g0075 842 Gene3D - 199 329 IPR011989 -
Prci1g0075 842 SUPERFAMILY ARM repeat 386 797 IPR016024 -
Prci1g0075 842 SUPERFAMILY ARM repeat 182 438 IPR016024 -
Prci1g0075 842 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 388 430 IPR000225 GO:0005515
Prci1g0075 842 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 182 842 - -
Prci1g0075 842 SMART arm_5 336 376 IPR000225 GO:0005515
Prci1g0075 842 SMART arm_5 377 417 IPR000225 GO:0005515
Prci1g0075 842 SMART arm_5 254 293 IPR000225 GO:0005515
Prci1g0075 842 SMART arm_5 638 678 IPR000225 GO:0005515
Prci1g0075 842 SMART arm_5 503 543 IPR000225 GO:0005515
Prci1g0075 842 SMART arm_5 710 750 IPR000225 GO:0005515
Prci1g0075 842 SMART arm_5 754 794 IPR000225 GO:0005515
Prci1g0075 842 SMART arm_5 418 461 IPR000225 GO:0005515
Prci1g0075 842 Gene3D - 695 839 IPR011989 -
Prci1g0075 842 Coils Coil 408 428 - -
Prci1g0075 842 Gene3D - 330 687 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0075 Prci-Chr1 681607 685944 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0075 201 842 U-box Gene Family AT1G20780 29.662 1.14e-51 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0075 K08332 - gmx:100791453 1124.38