Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0072 ATGGCCAGAAAGAGAAAGACCATTGATGTTGAAGAAGCAGGGGAAGAGAAGAGTGGCAATCAGGGAAGCATGGGATGGGAGGAGGCGGTGAAGGAGGCTGCCGCGCTGGGAGGCCTCCACCGAGCCCGGAAGCGATTCGTCGGGGTCCGGCAGCGGCCTTCGGGGCGGTGGGTGGCGGAGATAAAAGACACCATACAGAAGATAAGGGTGTGGCTTGGCACTTTTGACACTGCAGAAGAAGCAGCAAGAGCCTATGATGAAGCTGCTTGCTTGCTTAGAGGAGCCAACACCCGAACAAATTTCTGGCCTTGTCAATCTCAATCCAACTCTTCCACTCCTGCTCTTTCCTCAAAAATCACCAATCTCCTCCTTCAAAGGCTCCAAGCAAGAAATAACCAAATCCATAACTCGCTGCCTTCTGCTTCCTCCTTCTCCTCTGTTTCTTCTCTGCTCATCAATCAGCAACAGAACCAAGAAGTAGAGGAAAAAACACAGTTTTCAATGGACCAGTTTACCGACTTTCTTAATGATCCTGATGATTACACCACAACAAGCAATAACAACGAACAGTTTGATTTCCTTACTCGTAGTTTCGAGTCGTGTTTGACAGAGAACGATGAGCGCAAGGAAAGAGCAGAGATGATTGGCCATTCAGGAGAGGAGAAAGAGGAAGAAAGCGGTAGTGAGGTTGTTATGGGGTTGCAGGATTTTGAGTTTCTCGACAGCGCTGTGCCATCCTCATGGTGCTCCTATTCGCCATTCGAGATGGCTCGAGGAATGGAGGAGGAGGAGGAAGAGGAAGAGGGAGAGAGCTATGGTGGGGATGAGCCTTGTATGCTGAGAGCGGCCATGAAGAGGATGAAGTATGAGAGGAAGTTCTCTGCTTCTCTCTATGCTTTCAATGGGATATCAGAATGCTTGAAGTTGAAATTTGGATCGTCAAACTTGAAGGGAAGATCAATTTCTGAACAACTATCTAATCTCCAGATGGCGTGTTCCAGTAACGACAAAATTGAGAATAAGAACATCAACACCAAAGACGAAGAAGAAAGCCCACAAGCATCAATTGATATTTCTGACCATTCTTCTTCTTCTTCTTCTTCTTCCTCTGGTGATGATAATGAATTGATTTGGAATTCACTGGATCTTCCTCCGATCTGCTTTGTTAGCTAA 1173 0.4689 MARKRKTIDVEEAGEEKSGNQGSMGWEEAVKEAAALGGLHRARKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCQSQSNSSTPALSSKITNLLLQRLQARNNQIHNSLPSASSFSSVSSLLINQQQNQEVEEKTQFSMDQFTDFLNDPDDYTTTSNNNEQFDFLTRSFESCLTENDERKERAEMIGHSGEEKEEESGSEVVMGLQDFEFLDSAVPSSWCSYSPFEMARGMEEEEEEEEGESYGGDEPCMLRAAMKRMKYERKFSASLYAFNGISECLKLKFGSSNLKGRSISEQLSNLQMACSSNDKIENKNINTKDEEESPQASIDISDHSSSSSSSSSGDDNELIWNSLDLPPICFVS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0072 390 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 306 - -
Prci1g0072 390 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Prci1g0072 390 MobiDBLite consensus disorder prediction 338 378 - -
Prci1g0072 390 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677
Prci1g0072 390 CDD AP2 44 101 IPR001471 GO:0003700|GO:0006355
Prci1g0072 390 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Prci1g0072 390 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Prci1g0072 390 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Prci1g0072 390 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Prci1g0072 390 MobiDBLite consensus disorder prediction 1 24 - -
Prci1g0072 390 Pfam AP2 domain 45 94 IPR001471 GO:0003700|GO:0006355
Prci1g0072 390 MobiDBLite consensus disorder prediction 1 16 - -
Prci1g0072 390 MobiDBLite consensus disorder prediction 356 376 - -
Prci1g0072 390 MobiDBLite consensus disorder prediction 340 355 - -
Prci1g0072 390 FunFam ethylene-responsive transcription factor RAP2-11 44 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0072 Prci-Chr1 660698 662261 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0072 43 123 AP2-EREBP Transcription Factor Family AT5G19790 72.619 5.51e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Prci1g0072 AP2 7.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0072 K09286 - gmx:100786711 405.216