Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0052 ATGTCTTCAGATTCTGATGCCACCTTCCCCAATTCATCATCCTCGACTCCATTGCAATTAGACGATCCCCAAATTCGAAGATTGTCTACGCTTCTCCCTCTGCTTCTCAGTTTAGCACCTCCTCGCCACATCCCAGAATTCGATACTGCAAGCCACCGTGGTCGAGTCCGGATCATCATAGTTGACCCGTCAGCTGGAGCTATGATCGTGATCGAAGGCTATGGGGATCTCCAATCCGTGCTTCAAGGCCTCTCGGGGAAGCCTGGAGCGTTGCCGGCGTCCAAGGATTCGATTCAGGCCATGCCGAGAGTGGTGGTGACCGAAGAAGGCGCGGATTGTTCGATCTGCTTGGAAGCTTACGAAGTCGGCGGTGAGGCTAGGGAAATGCCTTGCAAGCATAAATTCCACTCTGGGTGTATTGAGAAGTGGCTAGGGCTTCACGGGTCTTGCCCAATCTGCCGATATGCCATGCCGGCGGAGGAGGAAAACACAAGCACCGCCGGCAGCGAGGACGAGCAAGATGGTGCCGAGAGGAGGGAGAGCGGTGAGGGGCTGGTATCCGTGAGTGTATGGGTTAGGTCCCTCGACGAAGACGACGACGACGACGACGACGATCCAATGGAAGTGGATTCAGACTTGGATCACGGATCCGGGGGATCCAATAGTGGTTCAGGAGAAGGGAATTCTGCAGGGGATGAAGACTCTTGGATGATGGATCAAGAGCCGCAAGATATGGAATTCTGA 744 0.5444 MSSDSDATFPNSSSSTPLQLDDPQIRRLSTLLPLLLSLAPPRHIPEFDTASHRGRVRIIIVDPSAGAMIVIEGYGDLQSVLQGLSGKPGALPASKDSIQAMPRVVVTEEGADCSICLEAYEVGGEAREMPCKHKFHSGCIEKWLGLHGSCPICRYAMPAEEENTSTAGSEDEQDGAERRESGEGLVSVSVWVRSLDEDDDDDDDDPMEVDSDLDHGSGGSNSGSGEGNSAGDEDSWMMDQEPQDMEF 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0052 247 SUPERFAMILY RING/U-box 107 158 - -
Prci1g0052 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 158 - -
Prci1g0052 247 SMART ring_2 113 153 IPR001841 -
Prci1g0052 247 MobiDBLite consensus disorder prediction 1 22 - -
Prci1g0052 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 160 IPR013083 -
Prci1g0052 247 MobiDBLite consensus disorder prediction 163 247 - -
Prci1g0052 247 FunFam E3 ubiquitin-protein ligase RNF181 82 160 - -
Prci1g0052 247 ProSiteProfiles Zinc finger RING-type profile. 113 154 IPR001841 -
Prci1g0052 247 MobiDBLite consensus disorder prediction 215 229 - -
Prci1g0052 247 Pfam Ring finger domain 112 154 IPR001841 -
Prci1g0052 247 MobiDBLite consensus disorder prediction 195 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0052 Prci-Chr1 508233 509424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0052 1 160 C3H Transcription Factor Family AT1G26800 41.358 4.31e-35 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0052 - K11982 ming:122075836 161.77