Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0013 ATGCCTTATCGTCAACGAAGGAAAGAAAAGCGAGGACTGGAGTTCGGCGGGTGTATCAATTTCATGGCTCTCCCAGTAGCAGTCCGTTGCCCAGGCTCGACCCTTTTATCTCCACTCTCCCCACCTCTTTCCTTCGCTGCACTTCGATTTTCGCCTCCTAAATGTTTCTTATGTTCAAGACCTGTTCTCCGCTCCCTCCGCGTCGACATCAGGCGATCTTACCCCTTCGTGACGGCCACCTTCTCCACCTCTGATGCTTTGTCCACCCCTGCTACTACACGTGATAAGAAGGTGCTGCTTCAAGTCAATGATTTGAGAGCCAAGATAGTTGAATCCGATGTAGAAATTCTTCGTGGGGTCAACCTCATCGTCAATGAAGGAGAGGTTCATGCGATCATGGGAAAGAATGGTTCTGGAAAGAGCACTTTTGCAAAGGTTCTTGTTGGCCATCCGGATTATGAAGTCACTGGAGGCAGTGTTCTGTTCAAAGGGAAAAATCTGCTTGACATGGAACCTGAGGAAAGGGCACTTGCTGGCCTTTTTATGAGCTTCCAGTCCCCTGTTGAGATCCCTGGTGTTTCTAATTATGATTTTCTGGTTATGGCTCATAATGCTCGACGAAGAAAACTTGGTCAGCCTGAACTCGGTCCACTTGAGTTCCTGCCTTACCTAATGGAGAAAGTCAATCTTGTAAACATGAAGGAAGACTTTTTGGATAGAAATGTTAATGAGGGATTTAGTGGTGGCGAACGGAAGCGCAATGAAATCCTGCAGCTTGCGGTTATGGGAGCAGACTTGGCTATTATGGATGAAATAGATTCTGGATTGGATGTAGATGCACTGAGAGATGTAGCAAATGCAGTGAATCAGATTCTGACCCCAAAAAATTCTCTGTTGATGATAACTCATTATCGACGAATTTTGGATCTCCTAAATCCTGCACATGTTCACATAATGGACAAGGGGAAGATTGCAAGGACAGGTGACTTATCCATGGTTGAAGTTATTGAGGCAGAGGGATATGAAACAGTATCCACCTAA 1041 0.4573 MPYRQRRKEKRGLEFGGCINFMALPVAVRCPGSTLLSPLSPPLSFAALRFSPPKCFLCSRPVLRSLRVDIRRSYPFVTATFSTSDALSTPATTRDKKVLLQVNDLRAKIVESDVEILRGVNLIVNEGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVLFKGKNLLDMEPEERALAGLFMSFQSPVEIPGVSNYDFLVMAHNARRRKLGQPELGPLEFLPYLMEKVNLVNMKEDFLDRNVNEGFSGGERKRNEILQLAVMGADLAIMDEIDSGLDVDALRDVANAVNQILTPKNSLLMITHYRRILDLLNPAHVHIMDKGKIARTGDLSMVEVIEAEGYETVST 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0013 346 CDD ABC_FeS_Assembly 100 341 IPR010230 GO:0005524
Prci1g0013 346 Pfam ABC transporter 117 271 IPR003439 GO:0005524
Prci1g0013 346 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 100 346 IPR003439 GO:0005524
Prci1g0013 346 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 82 345 IPR010230 GO:0005524
Prci1g0013 346 NCBIfam Fe-S cluster assembly ATPase SufC 100 343 IPR010230 GO:0005524
Prci1g0013 346 SMART AAA_5 126 329 IPR003593 GO:0016887
Prci1g0013 346 ProSitePatterns ABC transporters family signature. 246 260 IPR017871 GO:0005524|GO:0016887
Prci1g0013 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 99 330 IPR027417 -
Prci1g0013 346 Gene3D - 99 345 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0013 Prci-Chr1 183840 191445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0013 113 331 Calmodulin-binding Proteins AT2G36910 25.446 6.64e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0013 K09013 - qsa:O6P43_003890 428.713