Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1g0010 ATGAAGATGCAGCCAGACGGTACTGGAGCTGGGGCTGCCTCCGCCGCTGCTGCGCCGAACCCTTGCGAAGGGGCAGAGAAGAAGAGCATAAATCCAGAGCTTTGGCAAGCTTGTGCGGGGCCGCTGGTGAACCTGCCGCCATCAGGTACTCACGTGGTGTACTTCCCTCAAGGTCACAGTGAACAGGTTGCAGCATCTTTAAAGAAGGATGTGGATGGTCAGATTCCAAACTATCCAAATCTCCCTTCCAAGTTACTCTGTCTCCTTCTCAGTGTCACCTTGCATGCTGACCCAGAAACTGATGAAGTATATGCTCAGATGACACTTCAACCAGTGCCTTCTTTTGACAAGGACGCATTGTTAAGATCTGATCTTGCTCTCAAATCAAGTAAACCACAGCCTGAGTTCTTCTGTAAACAATTGACGGCGAGTGATACGAGTACACATGGAGGTTTTTCTGTCCCACGCCGTGCAGCAGAGAAGATTTTCCCTGCTCTTGATTATACTATGCAACCACCTGCACAAGAACTTGTGGCAAGGGATTTGCATGACAATGTCTGGACATTTCGCCATATATATCGAGGACAACCAAAGCGACACTTACTTACAACAGGATGGAGTCTATTTGTCAGTGGAAAGAGGCTATTTGCTGGAGACTCTGTTTTGTTTATAAGAGATGAAAAGCAGCAGCTTCTTCTTGGTATCAGGCGAGCTCACAGACAACCCACAAATCTATCATCTTCAGTGCTATCAAGTGATAGTATGCATATTGGAATTCTGGCAGCAGCAGCTCATGCTGCTGCAAACAACAGCCCCTTCACTGTGTTTTATAACCCTAGGGCTAGCCCGTCAGAATTTGTTATTCCTTTGGCGAAGTACTACAAGGCAGTGTATAGCCACCAAATATCTCCTGGCATGCGCTTCCGAATGATGTTTGAAACTGAAGACTCAGGAACAAGAAGGTATATGGGTACAATTACAGGAATCTGTGATCTGGATCCTGCAAGATGGAAAAACTCACAATGGCGCAATTTGCAGGTCGGTTGGGATGAATCAACTGCTGGAGAAAGACGAAGTAGGGTTTCAATATGGGAAATTGAACCAGTGACAGCTCCATTTTTCATCTGTCCACCTCCGTTCTTCCGGTCTAAGCGTCCAAGACAACCAGGAATGCCTGATGATGATCTTTCTGATTTTGATAACCTTTTTAAGCGGATGATGCCTTGGCCTGGTGATGATATATGCATGAAGGATCCTCAGTCACTCCCTGGCCTCAGCTTAGTTCAATGGATGAATATGCAGCAAAATCCTGCTCTGTCTAGCTCATTGCAGCCAAATTACGTGCAGTCCTTGTCTGGTTCTGCTCTGCAAAATCTTCCTAGTGCAGATATTGCCCGTCAGCTGGGATTTTGTGCTCCACAGATCTCTCAGTCAAGCAATGCAGCTTTCAGTCCTCAGAGGTTACTTCAAACCCCACAACAAGTTGATCATCTTCAGAAGATGCCATCTGTGTCTAGCCCATTAGGAACGGTCATGCAGCCACTACAAGTAGGTGATATCACTCAGCAACCTAGACAGAATTTAGGAAATCAAACTCTACCACAGAGTCAAGTTCAGAACCAACTTCTGCATGCTCAAAATATTGTTCAACCTACCAATATACTTCAACAGCAGCAACCATCCATCCAAAACCATCAGCTGCATAGGAACCTCTCCCAGAACCTGTCACAGCCTCAGCAGCAACAGACATTTATGGGTCAGAATCAACAGCAAAATTTTATACAGTCCTCCATGCCTGATCATGTCAATCAACAGATGCAGATGTCTGACAATCAGATTCAGCTTCAATTATTGCAGAAGCTTCAACAGCAACAGCAAACAATCTTGGCGCAGCAGTCCATAATGCAGCAGCCTACTCAACTTAGTCAAATCCAAGACCAGCAGAGGCAACTTTTAGATCCAACTCAGAACTTCTCAAGGGCCCTAACGTCAAGTCAAGTGTTAGAAATTCCTGCCATACTTCAAAACTCACTTCCTGATGGTAACTCTATTCCACATCAGATGACGAAGAATAATGGCCAGACCAGTGTTCAGTTCTCTCATCCATCCCGGCAGACAAAGCTTCAACAACAGCTATCTGGCACACTGTCCGAGATGTCTGAGCATGTGGGATTCCTCCCTGCTCCTACTGCCAACAAACTCTCTGTGGCTGGTGGTAATATATTAACTGGAACAGCTGGAGCAGGGCAGTCTGTAATTACTGATGACATTCCATCTTGTTCCACTTCACCTTCCACTAATAACTGTGCCAATGCACTTCCACATGTGAATTCCCGGATCCATAGGAACACAGCGATAGGGGATGATATGGCTCAATCTGCAGCCACGATCTTAAGTCCTAGTGCCTTAGAGGCCATGTCTTCAAATGCAAGCTTGGTGAAAGATTTTCACCCAAAATCTGAAGTCAAGCCTTCTTTAAATATTTGCAAAAGTCAAAATCAAGGGAATTTTTCCACTCATGCGTACTTAAATGGTGGAGCTGCACAGACAGATTATTTGGATACATCATCTTCTACAACTTCAGTTAGCCTTTCTCGAAATGACACTTGTATGCATCAGAATAACAATCCATTATCTTACAATCCGCAGTCAATGCTGTTTAGAGACAATAATCAAGATGGGGAAATTCAGCTAGATGCTAGGAGCAATGTTCCTTATGGCAATAATATTGATGGTCAATTGGGAATGCCGCTGAATCCAGATTCTCTTTTGATCAAAGGCACAATAGGGCTGGGAAAGGATATGTCAAATAACTTTTCTTCAGGAGGCATGCCTGGTAACTATGAGGATAACAGAGGTGCTCAGCAAGAACTCTCTTCATCAATTGTTTCACAGACATTTGGGGTCCCTGATATGACCTTTAATTCAATTGATCCCACAATAAATGATAGTAGCTTCTTAAATAGGGGTACATGGGCCCCACCTCCTCCCCCACCACAGTTTCAGCGGATGAGAACGTATACCAAGGTATACAAACGTGGAGCTGTTGGTAGGTCCATAGACATAACCCGGTATTCAGGTTATGAGGAGCTTAAACAAGACTTGGCTCGTAGATTTGGCATAGAGGGACAGTTGGAGGACTGGCAAAGAATAGGCTGGAAACTTGTTTATGTGGATCATGAAAATGATGTTTTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTGAACTGTGTCCGCTGCATCAAAATACTTTCTCCTCAAGAGGTGCAACAGATGAGTTTGGATGGAGATTTTGGCAATGGTGGCCTTCCAAATCAGGCCTGTAGCAGCTCTGATGGTGGAAATACCTAA 3354 0.4484 MKMQPDGTGAGAASAAAAPNPCEGAEKKSINPELWQACAGPLVNLPPSGTHVVYFPQGHSEQVAASLKKDVDGQIPNYPNLPSKLLCLLLSVTLHADPETDEVYAQMTLQPVPSFDKDALLRSDLALKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPALDYTMQPPAQELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFIRDEKQQLLLGIRRAHRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDSGTRRYMGTITGICDLDPARWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFFICPPPFFRSKRPRQPGMPDDDLSDFDNLFKRMMPWPGDDICMKDPQSLPGLSLVQWMNMQQNPALSSSLQPNYVQSLSGSALQNLPSADIARQLGFCAPQISQSSNAAFSPQRLLQTPQQVDHLQKMPSVSSPLGTVMQPLQVGDITQQPRQNLGNQTLPQSQVQNQLLHAQNIVQPTNILQQQQPSIQNHQLHRNLSQNLSQPQQQQTFMGQNQQQNFIQSSMPDHVNQQMQMSDNQIQLQLLQKLQQQQQTILAQQSIMQQPTQLSQIQDQQRQLLDPTQNFSRALTSSQVLEIPAILQNSLPDGNSIPHQMTKNNGQTSVQFSHPSRQTKLQQQLSGTLSEMSEHVGFLPAPTANKLSVAGGNILTGTAGAGQSVITDDIPSCSTSPSTNNCANALPHVNSRIHRNTAIGDDMAQSAATILSPSALEAMSSNASLVKDFHPKSEVKPSLNICKSQNQGNFSTHAYLNGGAAQTDYLDTSSSTTSVSLSRNDTCMHQNNNPLSYNPQSMLFRDNNQDGEIQLDARSNVPYGNNIDGQLGMPLNPDSLLIKGTIGLGKDMSNNFSSGGMPGNYEDNRGAQQELSSSIVSQTFGVPDMTFNSIDPTINDSSFLNRGTWAPPPPPPQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDWQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDFGNGGLPNQACSSSDGGNT 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1g0010 1117 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 729 IPR044835 GO:0003677|GO:0006355|GO:0009725
Prci1g0010 1117 Gene3D - 135 238 IPR015300 -
Prci1g0010 1117 SMART B3_2 137 239 IPR003340 GO:0003677
Prci1g0010 1117 Pfam Auxin response factor 263 346 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Prci1g0010 1117 Gene3D - 1000 1094 - -
Prci1g0010 1117 FunFam Auxin response factor 301 372 - -
Prci1g0010 1117 FunFam Auxin response factor 1000 1094 - -
Prci1g0010 1117 Pfam B3 DNA binding domain 137 238 IPR003340 GO:0003677
Prci1g0010 1117 MobiDBLite consensus disorder prediction 1 26 - -
Prci1g0010 1117 SUPERFAMILY DNA-binding pseudobarrel domain 126 266 IPR015300 -
Prci1g0010 1117 ProSiteProfiles PB1 domain profile. 1005 1089 IPR000270 GO:0005515
Prci1g0010 1117 Pfam AUX/IAA family 1005 1090 IPR033389 -
Prci1g0010 1117 ProSiteProfiles B3 DNA-binding domain profile. 137 239 IPR003340 GO:0003677
Prci1g0010 1117 CDD B3_DNA 136 228 IPR003340 GO:0003677
Prci1g0010 1117 Gene3D - 301 372 - -
Prci1g0010 1117 FunFam Auxin response factor 135 239 - -
Prci1g0010 1117 SUPERFAMILY CAD & PB1 domains 1018 1083 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Prci1g0010 Prci-Chr1 113186 120719 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1g0010 12 500 B3 DNA Binding Superfamily AT1G19220 71.138 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Prci1g0010 B3 3.9e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1g0010 - - ccaj:109803454 1724.52