Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1971g0001 ATGGAAACTCTGTACCCACCTTCTTTTATGCCAAACTCAGACTGGTTCGTGCAAGAGAGCATCAACAACACAGAATGGACGAGAGAAGAGAACAAGAGGTTTGAAAGTGCCCTTGCCATATACGACAAGGACACCCCAGATAGGTGGCTAAATGTGGCAGCCATGATCCCCGGAAAAACCGTGTGCGATGTCATCAAGCAGTACAGAGAACTTGTAGAAGACATCGGCGAAATCGAAGCCGGTCGGGTCCCAATTCCTGGCTACCTGGGTTCTTCTTTCACCTTTGAGCTGGTCGATCACCCGAATTATGATGCATACAGAAAGAGGCCCGTGGCTTTCAAGGGTTCTGATCACGAGAGAAAGAAAGGGGTCCCTTGGACTGAAGAAGAACACAGGCGTTTTCTGATGGGCCTTCTTAAGTATGGTAAAGGGGATTGGAGGAACATCTCAAGAAACTTTGTGGTGACAAAGACACCAACCCAAGTGGCGAGTCATGCTCAGAAGTACTACATAAGGCAGAAGCTGTCTTCTGGAGGGAACAACAAAAGGAGACCAAGTATACACGACATAACCATTGTCAATCTCACAGAATCTACCAACCCACAAGACAACATGCCCCTTCAGTTGAATGATCAGTCTTCTATGTTCTCACCAAATCAGAAGCCAAATGATGGGGTTTTCAACCCTAGTTGTGACAGTTTATTGCATTCATCTTCATCTGATATTGATCGTGCCCTTCATGAGGCTTTTGGTTGCACCAACCACAAAAACCAGGGTTTTAGGGCAAATTCAGGGGACTTCAATAACCCAGCTGTTTTAGGTATTCATGCATTGTAA 837 0.4588 METLYPPSFMPNSDWFVQESINNTEWTREENKRFESALAIYDKDTPDRWLNVAAMIPGKTVCDVIKQYRELVEDIGEIEAGRVPIPGYLGSSFTFELVDHPNYDAYRKRPVAFKGSDHERKKGVPWTEEEHRRFLMGLLKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSSGGNNKRRPSIHDITIVNLTESTNPQDNMPLQLNDQSSMFSPNQKPNDGVFNPSCDSLLHSSSSDIDRALHEAFGCTNHKNQGFRANSGDFNNPAVLGIHAL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1971g0001 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 174 IPR017930 -
Prci1971g0001 278 Gene3D - 18 85 - -
Prci1971g0001 278 SMART sant 122 172 IPR001005 -
Prci1971g0001 278 SMART sant 22 74 IPR001005 -
Prci1971g0001 278 ProSiteProfiles Myb-like domain profile. 18 72 IPR001005 -
Prci1971g0001 278 NCBIfam myb-like DNA-binding domain, SHAQKYF class 121 173 IPR006447 GO:0003677
Prci1971g0001 278 ProSiteProfiles Myb-like domain profile. 118 170 IPR001005 -
Prci1971g0001 278 ProSiteProfiles SANT domain profile. 126 174 IPR017884 -
Prci1971g0001 278 FunFam transcription factor MYB1R1 124 175 - -
Prci1971g0001 278 CDD SANT 125 169 IPR001005 -
Prci1971g0001 278 Pfam Myb-like DNA-binding domain 125 169 IPR001005 -
Prci1971g0001 278 CDD SANT 25 72 IPR001005 -
Prci1971g0001 278 Gene3D - 124 175 - -
Prci1971g0001 278 SUPERFAMILY Homeodomain-like 24 75 IPR009057 -
Prci1971g0001 278 FunFam Transcription factor SRM1 18 85 - -
Prci1971g0001 278 SUPERFAMILY Homeodomain-like 120 174 IPR009057 -
Prci1971g0001 278 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 19 228 IPR043363 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Prci1971g0001 Myb_DNA-binding 1.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1971g0001 - - gmx:778039 374.015