Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1965g0003 ATGAAGCTGTCCGGAGAAAGTATGGCGTCCGACGAAGGCACTAGTGACTGCGACGGTGGTCGGACGGTCGTGGTCGGGGTGAAGTTGGATCCTCGGAGCAGGGAATTGCTTACATGGGCCCTCGTCAAAGTGGCGGAGCCTGGTGACCATGTCATTGCGCTTCACGTTATCGGCACGGGTACGGGATCGCTCATCTCTCTTGTAAATACTTTTGATTCTGTTCTTGCCGTTTACGAAGGTTTCTGCAACTTGAAGCAGGTTGGTCTCAAGCTGAAAGTATGTAGAGGTGAGTCATCTCGGAAACTTCTTGTACGGGAGGCGAAGTCGCTCGGTGCATCAACTGTAATTTTGGGGACTTCTAAAACGCATCATACAATCCGGTCATCGGCATCCGTTGCCAAGTATTGTGCAAAAAAACTGCCCAAATATATCTCTGTCTTTGCTGTTGACAATGGCAAAATTGCGTTCCACAGAGAGGCTACGAAAATACGTGCTATTCAAGAACTGAATGAAGGCCCGGCTTTATTACATAAATCTTTCAAGCCTTGTACAAAGACAAATCCCAGGAACTGTGAAAGTTGTGCGAGGGTGTTGGCACTTCCAGAGAGTTCTGCAACTGGAGCTTTGCCTGATGATCAGGAAAAGAATGATTCACTAGCTTTAGTACCGGTCCAGAAAACTGGTGGTCCTTGGTATGCAACTGTGGTTCAGGAATCAAACCAGTCTAAACATGGTTGGTCTGTCCTTCGCCAGGTATTTCTGCCCAAAAAGCATATACAGAAATCCTATGTGAGCAATCCATATGTTTTTCAACGGGTTGTTAAACAGCCCAGCTGGCATTCATCAGCTGTAGTCCATCCAGATCTTAAACAAATTAATATTGACAAAAATGACATTACTACCCTTGATGGGCAGAGCGGTGCCATTGTGCCATTCAGATCTGCTGCTAACTCTGGCTTGAGCAACTTTCATGAAGAATTGTCCAGGTTACAGGAGAAGTACTCATCCTCATGCAGAGTATATAGTTTCCAAGAACTTGCTTCTGCAACTGCTAACTTCTCGCCTGATAATTTGGTTGGCAAAGGTGGCAGTAGCTATGTTTATAAAGGATGTCTTCTAGATGGCAAGGTGGTGGCCGTAAAAATTTTGAAGCCATCAGAAGATGTGTTCAAAGAGTTTCAGCTGGAAATTGAGATCATCACAACTTTGCATCATGAGAACATAATATCTTTATCTGGGTTTTCTTTTGACGACAATAACTTGCTTTTGGTTTATGATTTTCTATCAAGAGGAAGCCTAGAAGAGAACATTCATGGTGATAAGAAGGACTGTAATGTATTTGGCTGGCAAGAGAGGTATAAAGTGGCTGTGGGCGTTGCTGAGGCACTGAACTTTCTGCATAATGGCTGTGCATATGCTGTGATTCACAGGGATGTAAAATCTTCAAACATCCTTCTTTCAGATAATTTTGAGCCTCAGCTCTCCGATTTTGGGCTTGCCAGTTGGGGTTCTTCTTCATCCCACGTTACTTGTACTGATGTGGCTGGAACCTTTGGATACCTGGCTCCAGAGTACTTTATGCATGGTAGGGTAACTGACAGAATCGATGTATATGCTTTTGGTGTTGTGCTTCTTGAGCTTCTTTCTAGCAGGAAGCCCATCAATAACGAATCCCCTAAGGGCCAGGAGAGTCTTGTGATGTGGGCAAGACCAATTCTAAAGGATGGAAAGCTCTCACAATTGCTTGATTCAAGCGTTGGCGATCCTCAAGAGTGGCTAATTGACAGAATGGCTTTGGCTGCTACCCTTTGCCTCCGACGATCACCTAAATCTCGACCTCAAATCGACATTATATTGAAACTTCTGCATGGTGATGAGGAAGTGACAAGTTGGGCAAAACAAGAAGTCGGTGCACCAGAAGAACTTGAAGCGTCTGATGGGGGACTGAATAATATTCAGTCCCATTTGAACCTTGCTTTGCTGGACCTGGACGATGATACAGCTTCTGTCAGTAGCTCTGAGCAGAGTGTCTCGTTGGAGGACTATTTACAAGGAAGATGGAGTCGCTCCTCAAGTTTTGATTAA 2085 0.448 MKLSGESMASDEGTSDCDGGRTVVVGVKLDPRSRELLTWALVKVAEPGDHVIALHVIGTGTGSLISLVNTFDSVLAVYEGFCNLKQVGLKLKVCRGESSRKLLVREAKSLGASTVILGTSKTHHTIRSSASVAKYCAKKLPKYISVFAVDNGKIAFHREATKIRAIQELNEGPALLHKSFKPCTKTNPRNCESCARVLALPESSATGALPDDQEKNDSLALVPVQKTGGPWYATVVQESNQSKHGWSVLRQVFLPKKHIQKSYVSNPYVFQRVVKQPSWHSSAVVHPDLKQINIDKNDITTLDGQSGAIVPFRSAANSGLSNFHEELSRLQEKYSSSCRVYSFQELASATANFSPDNLVGKGGSSYVYKGCLLDGKVVAVKILKPSEDVFKEFQLEIEIITTLHHENIISLSGFSFDDNNLLLVYDFLSRGSLEENIHGDKKDCNVFGWQERYKVAVGVAEALNFLHNGCAYAVIHRDVKSSNILLSDNFEPQLSDFGLASWGSSSSHVTCTDVAGTFGYLAPEYFMHGRVTDRIDVYAFGVVLLELLSSRKPINNESPKGQESLVMWARPILKDGKLSQLLDSSVGDPQEWLIDRMALAATLCLRRSPKSRPQIDIILKLLHGDEEVTSWAKQEVGAPEELEASDGGLNNIQSHLNLALLDLDDDTASVSSSEQSVSLEDYLQGRWSRSSSFD 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1965g0003 694 Gene3D HUPs 8 149 IPR014729 -
Prci1965g0003 694 Gene3D Transferase(Phosphotransferase) domain 1 428 638 - -
Prci1965g0003 694 ProSiteProfiles Protein kinase domain profile. 353 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1965g0003 694 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 322 427 - -
Prci1965g0003 694 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Prci1965g0003 694 SMART serkin_6 353 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1965g0003 694 SUPERFAMILY Protein kinase-like (PK-like) 333 622 IPR011009 -
Prci1965g0003 694 CDD USP_Like 22 149 - -
Prci1965g0003 694 FunFam Putative receptor-like serine/threonine-protein kinase 428 638 - -
Prci1965g0003 694 Gene3D Phosphorylase Kinase; domain 1 316 427 - -
Prci1965g0003 694 Pfam Protein kinase domain 356 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1965g0003 694 PANTHER OS08G0249100 PROTEIN 71 639 IPR046958 -
Prci1965g0003 694 Pfam Universal stress protein family 21 142 IPR006016 -
Prci1965g0003 694 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 141 - -
Prci1965g0003 694 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 20 150 - -
Prci1965g0003 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1965g0003 341 693 Trihelix Transcription Factor Family AT1G70460 39.722 1.35e-72 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Prci1965g0003 Pkinase 2.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1965g0003 - - gmx:100815722 890.952