Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1965g0002 ATGAAGCTGTCCGGAGAAAGTATGGCGTCCGACGAAGGCACTAGTGACTGCGACGGTGGTCGGACGGTCGTGGTCGGGGTGAAGTTGGATCCTCGGAGCAGGGAATTGCTTACATGGGCCCTCGTCAAAGTGGCGGAGCCTGGTGACCATGTCATTGCGCTTCACGTTATCGGCAGTATGCCTGCGGGTACGGGATCGCTCATCTCTCTTGTAAATACTTTTGATTCTGTTCTTGCCGTTTACGAAGGTTTCTGCAACTTGAAGCAGGTTGGTCTCAAGCTGAAAGTATGTAGAGGTGAGTCATCTCGGAAACTTCTTGTACGGGAGGCGAAGTCGCTCGGTGCATCAACTGTAATTTTGGGGACTTCTAAAACGCATCATACAATCCGGTCATCGGCATCCGTTGCCAAGTATTGTGCAAAAAAACTGCCCAAATATATCTCTGTCTTTGCTGTTGACAATGGCAAAATTGCGTTCCACAGAGAGGCTACGAAAATACGTGCTATTCAAGAACTGAATGAAGGCCCGGCTTTATTACATAAATCTTTCAAGCCTTGTACAAAGACAAATCCCAGGAACTGTGAAAGTTGTGCGAGGGTGTTGGCACTTCCAGAGAGTTCTGCAACTGGAGCTTTGCCTGATGATCAGGAAAAGAATGATTCACTAGCTTTAGTACCGGTCCAGAAAACTGGTGGTCCTTGGTATGCAACTGTGGTTCAGGAATCAAACCAGTCTAAACATGGTTGGTCTGTCCTTCGCCAGAGCGGTGCCATTGTGCCATTCAGATCTGCTGCTAACTCTGGCTTGAGCAACTTTCATGAAGAATTGTCCAGGTTACAGGAGAAGTACTCATCCTCATGCAGAGTATATAGTTTCCAAGAACTTGCTTCTGCAACTGCTAACTTCTCGCCTGATAATTTGGTTGGCAAAGGTGGCAGTAGCTATGTTTATAAAGGATGTCTTCTAGATGGCAAGGTGGTGGCCGTAAAAATTTTGAAGCCATCAGAAGATGTGTTCAAAGAGTTTCAGCTGGAAATTGAGATCATCACAACTTTGCATCATGAGAACATAATATCTTTATCTGGGTTTTCTTTTGACGACAATAACTTGCTTTTGGTTTATGATTTTCTATCAAGAGGAAGCCTAGAAGAGAACATTCATGGTGATAAGAAGGACTGTAATGTATTTGGCTGGCAAGAGAGGTATAAAGTGGCTGTGGGCGTTGCTGAGGCACTGAACTTTCTGCATAATGGCTGTGCATATGCTGTGATTCACAGGGATGTAAAATCTTCAAACATCCTTCTTTCAGATAATTTTGAGCCTCAGCTCTCCGATTTTGGGCTTGCCAGTTGGGGTTCTTCTTCATCCCACGTTACTTGTACTGATGTGGCTGGAACCTTTGGATACCTGGCTCCAGAGTACTTTATGCATGGTAGGGTAACTGACAGAATCGATGTATATGCTTTTGGTGTTGTGCTTCTTGAGCTTCTTTCTAGCAGGAAGCCCATCAATAACGAATCCCCTAAGGGCCAGGAGAGTCTTGTGATGTGGGCAAGACCAATTCTAAAGGATGGAAAGCTCTCACAATTGCTTGATTCAAGCGTTGGCGATCCTCAAGAGTGGCTAATTGACAGAATGGCTTTGGCTGCTACCCTTTGCCTCCGACGATCACCTAAATCTCGACCTCAAATCGACATTATATTGAAACTTCTGCATGGTGATGAGGAAGTGACAAGTTGGGCAAAACAAGAAGTCGGTGCACCAGAAGAACTTGAAGCGTCTGATGGGGGACTGAATAATATTCAGTCCCATTTGAACCTTGCTTTGCTGGACCTGGACGATGATACAGCTTCTGTCAGTAGCTCTGAGCAGAGTGTCTCGTTGGAGGACTATTTACAAGGAAGATGGAGTCGCTCCTCAAGTTTTGATTAA 1932 0.4539 MKLSGESMASDEGTSDCDGGRTVVVGVKLDPRSRELLTWALVKVAEPGDHVIALHVIGSMPAGTGSLISLVNTFDSVLAVYEGFCNLKQVGLKLKVCRGESSRKLLVREAKSLGASTVILGTSKTHHTIRSSASVAKYCAKKLPKYISVFAVDNGKIAFHREATKIRAIQELNEGPALLHKSFKPCTKTNPRNCESCARVLALPESSATGALPDDQEKNDSLALVPVQKTGGPWYATVVQESNQSKHGWSVLRQSGAIVPFRSAANSGLSNFHEELSRLQEKYSSSCRVYSFQELASATANFSPDNLVGKGGSSYVYKGCLLDGKVVAVKILKPSEDVFKEFQLEIEIITTLHHENIISLSGFSFDDNNLLLVYDFLSRGSLEENIHGDKKDCNVFGWQERYKVAVGVAEALNFLHNGCAYAVIHRDVKSSNILLSDNFEPQLSDFGLASWGSSSSHVTCTDVAGTFGYLAPEYFMHGRVTDRIDVYAFGVVLLELLSSRKPINNESPKGQESLVMWARPILKDGKLSQLLDSSVGDPQEWLIDRMALAATLCLRRSPKSRPQIDIILKLLHGDEEVTSWAKQEVGAPEELEASDGGLNNIQSHLNLALLDLDDDTASVSSSEQSVSLEDYLQGRWSRSSSFD 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1965g0002 643 Gene3D HUPs 20 153 IPR014729 -
Prci1965g0002 643 ProSiteProfiles Protein kinase domain profile. 302 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1965g0002 643 SMART serkin_6 302 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1965g0002 643 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 271 376 - -
Prci1965g0002 643 Pfam Universal stress protein family 21 145 IPR006016 -
Prci1965g0002 643 PANTHER OS08G0249100 PROTEIN 74 588 IPR046958 -
Prci1965g0002 643 Gene3D Transferase(Phosphotransferase) domain 1 377 587 - -
Prci1965g0002 643 Pfam Protein kinase domain 305 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1965g0002 643 FunFam Putative receptor-like serine/threonine-protein kinase 377 587 - -
Prci1965g0002 643 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 21 144 - -
Prci1965g0002 643 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 20 153 - -
Prci1965g0002 643 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Prci1965g0002 643 Gene3D Phosphorylase Kinase; domain 1 272 376 - -
Prci1965g0002 643 CDD USP_Like 22 152 - -
Prci1965g0002 643 SUPERFAMILY Protein kinase-like (PK-like) 282 571 IPR011009 -
Prci1965g0002 643 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1965g0002 290 642 Trihelix Transcription Factor Family AT1G70460 39.722 2.93e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Prci1965g0002 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1965g0002 - - gmx:100815722 807.749