Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1956g0002 ATGGCTTCTCCAAATTCTTCCCCTACTTCTGTGCCACCTACTTCTGCTGATAATTCCCCCTCAAATTCTGTCATATCATCACGGCCTCCCACTTCTTCTCCCCCAAGTCAAACCTCTAATACCCCTGCTCCTTCATCTCTTGACACTGCAACCCCACCTCCTTCCCCATCTCTTTCTCCTCCCCCGGCTACACCACCACCAGCTTCATCCCCGCCTCCGGCATTGCCACCACCGGCTTCACCTCCACCTGAAACATTGCCACCACCGGCTTCACCCCCACCTACGGCATTGCCACCATCACCACCTTTACCATCGACACCAAATTCTCCTCCACCAACGTCTTCAGCATTGCCACCACCATCTCCTCCACCAGCATCTGCCTCCACCCCTCCTCCAACTGAGAATTCACCTGCCATTTCAAATTTGTCCCCACCACCTCCTGTTGCTGGTTCTCCTCCTCCCCAAGCCTCAAATGAAACTCCTGCAGCCAATCCACCTCCCTCTCGACGCAATTCACCTCGTCCTCCTCCCCCTCCTCCCCCTCCTCCAAAGAATGTCCCAAAATCACCATCCCTCAGTTCCCCTCCTCCACCTCTGGGAAAGCCGCCAGAAAGTACTCCTTTGCTCAGTCCCCCGCCATCTGTTTCAGAATCTCCTCCTTCTCCTTCTGCAGCTGATCCCCCTCGATCCACTACACCATCACCTCCTTCAGTTCCAGCTGCTTCTTCATCTCCACCAACTGTTTCACCTTCTCCTCCAACTAATTCATCAGCTGCTGGGAGTCCAATTGCATCCCTACCGTCTATTCCAACAGAGAAACCAACTGCGAAACCAACTGGTGATGCTAGTGTAACTACAAATGCCCCGTCTACACATGCAAAGGGGTTGAGTACAGGAGGAGGTGTGGCCATTGGCATTGTAGTTGGCTTTGTTGTCCTCAGCCTTCTTATTATGGTTGTGTGGTTTGTAAAACGAAAGCGGAAGGAAAAAGGAGCAAAAGTTGGTTATGCTATGACCTCTCCATTTGGCTCATCTCAGAATTCAGGTACCATATTCTTGAGGCCACAATCTCCAGTTCCCTATTATGGTAGTAACTCTGGCAGTGGGATCATTTATTCTCCGTCAGAGCCTGGTGGAGTAAGTCAGTCAAGATCATCATTCATGTATGAAGAACTTGTGCAAGCGACTAATGGGTTTTCTGCACAAAACCTTTTGGGTGAAGGTGGATTTGGTTGTGTCTTCAAAGGTATGCTCACTGATGGAAGAGAAGTCGCTGTGAAACAGCTCAAAGTTGGTGGCGGGCAAGGGGAACGTGAATTCCAAGCAGAAGTTGAGATTATTAGCCGAGTACATCATCGCCATCTGGTTTCCTTGGTGGGTTACTGTATATCAGAGCATCAAAGACTGCTTGTCTATGACTATTTGCCCAACAATACCCTTCATTACCATCTTCATGGTGCAGACAGGCCAGTTTTGGAATGGGCTACCAGAGTCAAGATTGCTGCTGGTTCAGCCCGTGGAATAGCTTACCTACATGAAGACTGTCATCCACGCATTATTCACCGAGACATCAAGTCATCAAACATCCTTCTTGACAGCAATTTTGAAGCTCGGGTTTCAGATTTTGGGCTTGCAAAATTAGCCTTGGATTCATACACACATGTAACTACCCGTGTAATGGGAACCTTTGGGTACATGGCACCAGAATATGCAACAAGTGGGAAATTGACTGAAAAATCTGATGTTTATTCCTTTGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAGGCCTGTGGATGCCTCTCAGCCAATTGGTGATGAGAGCCTGGTTGAATGGGCTCGACCTTTGCTAACTGAAGCACTTGATACTGAAGACTTCGAAATATTGGTGGATCCAAGGTTAGGGAAGAACTATAACAGAAATGAAATGTTCCGGATGATTGAGGCAGCGGCGGCCTGTGTGCGTCACTCTGCTGTGAAGAGGCCACGAATGAGTCAGGTTGTGAGAGCTTTTGATTTGTTGGATGAACTAGCAGATCTGAATAATGGAATGAAACCTGGGCAGAGCTCAGTCTTTGATTCTGCAGAGCAAAATGAACAAATCAAAATGTTCAGGAGGCTGGCTTTCGGAAGCCAGGATTACAGTACCAGTTATTTCAACGAGTCTCACAGTAGCTGGGGAAGTAGAGATCAGGAGCACCAGACCACTACTTCCTTCTCCCAAAATAGGTCCGGACCTTGGAACGTATAA 2253 0.4856 MASPNSSPTSVPPTSADNSPSNSVISSRPPTSSPPSQTSNTPAPSSLDTATPPPSPSLSPPPATPPPASSPPPALPPPASPPPETLPPPASPPPTALPPSPPLPSTPNSPPPTSSALPPPSPPPASASTPPPTENSPAISNLSPPPPVAGSPPPQASNETPAANPPPSRRNSPRPPPPPPPPPKNVPKSPSLSSPPPPLGKPPESTPLLSPPPSVSESPPSPSAADPPRSTTPSPPSVPAASSSPPTVSPSPPTNSSAAGSPIASLPSIPTEKPTAKPTGDASVTTNAPSTHAKGLSTGGGVAIGIVVGFVVLSLLIMVVWFVKRKRKEKGAKVGYAMTSPFGSSQNSGTIFLRPQSPVPYYGSNSGSGIIYSPSEPGGVSQSRSSFMYEELVQATNGFSAQNLLGEGGFGCVFKGMLTDGREVAVKQLKVGGGQGEREFQAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYLPNNTLHYHLHGADRPVLEWATRVKIAAGSARGIAYLHEDCHPRIIHRDIKSSNILLDSNFEARVSDFGLAKLALDSYTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRRPVDASQPIGDESLVEWARPLLTEALDTEDFEILVDPRLGKNYNRNEMFRMIEAAAACVRHSAVKRPRMSQVVRAFDLLDELADLNNGMKPGQSSVFDSAEQNEQIKMFRRLAFGSQDYSTSYFNESHSSWGSRDQEHQTTTSFSQNRSGPWNV 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1956g0002 750 FunFam proline-rich receptor-like protein kinase PERK8 475 687 - -
Prci1956g0002 750 SUPERFAMILY Protein kinase-like (PK-like) 378 671 IPR011009 -
Prci1956g0002 750 Gene3D Transferase(Phosphotransferase) domain 1 475 690 - -
Prci1956g0002 750 MobiDBLite consensus disorder prediction 1 46 - -
Prci1956g0002 750 ProSitePatterns Protein kinases ATP-binding region signature. 405 427 IPR017441 GO:0005524
Prci1956g0002 750 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 310 716 IPR047117 -
Prci1956g0002 750 MobiDBLite consensus disorder prediction 47 252 - -
Prci1956g0002 750 FunFam Proline-rich receptor-like protein kinase PERK8 372 474 - -
Prci1956g0002 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 519 531 IPR008271 GO:0004672|GO:0006468
Prci1956g0002 750 SMART serkin_6 399 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1956g0002 750 ProSiteProfiles Protein kinase domain profile. 399 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Prci1956g0002 750 MobiDBLite consensus disorder prediction 722 750 - -
Prci1956g0002 750 MobiDBLite consensus disorder prediction 1 288 - -
Prci1956g0002 750 Pfam Protein tyrosine and serine/threonine kinase 402 670 IPR001245 GO:0004672|GO:0006468
Prci1956g0002 750 Gene3D Phosphorylase Kinase; domain 1 375 474 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1956g0002 307 745 Trihelix Transcription Factor Family AT1G70460 56.681 0.0 532
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Prci1956g0002 PK_Tyr_Ser-Thr 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1956g0002 - - gmx:100790988 808.52