Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1952g0001 ATGGACATGGAAGATGAGGAAAAGGCAGTCCGAAGGGTGGGAGACGGAGAAGAAGAATGTCGAGTTTTCCAATGCCAGTTCTGTTCAAGAAAGTTCTACAGCTCTCAAGCTTTGGGAGGACATCAAAATGCCCACAAAAAAGAGAGAACGGCTGCCAGAAAGGCTAAAAGGGCATCGGAGTGCTCCTCTGCTTGCCCTCCCCTGTTCCTCGCTTCTCACGCTTCAAGTCTTCACTACCTCCAACCCCATCAGATTTTTTACCCTTTCAGACCCAACGCTGCACCTACATTTGGCGGCAATTCTCTGTTTTGTGAACATGTTGGCGACAGAGGCCTGGGGAATTGGCACAGCAACATGTCACTCACAAGCGACGACCACAGCATTGGCATCTTGAAGCGTTGTCAAGAGAAAGATCAAAATCTTGATTTGACTCTGCGCCTATAG 444 0.4887 MDMEDEEKAVRRVGDGEEECRVFQCQFCSRKFYSSQALGGHQNAHKKERTAARKAKRASECSSACPPLFLASHASSLHYLQPHQIFYPFRPNAAPTFGGNSLFCEHVGDRGLGNWHSNMSLTSDDHSIGILKRCQEKDQNLDLTLRL 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1952g0001 147 ProSiteProfiles Zinc finger C2H2 type domain profile. 23 50 IPR013087 -
Prci1952g0001 147 Gene3D Classic Zinc Finger 6 66 - -
Prci1952g0001 147 ProSitePatterns Zinc finger C2H2 type domain signature. 25 45 IPR013087 -
Prci1952g0001 147 SUPERFAMILY beta-beta-alpha zinc fingers 21 50 IPR036236 -
Prci1952g0001 147 PANTHER ZINC FINGER PROTEIN JAGGED 17 147 IPR045320 GO:0003700
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1952g0001 1 64 C2H2 Transcription Factor Family AT5G25160 45.312 1.05e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Prci1952g0001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1952g0001 - - pcin:129290111 291.197