Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1940g0001 ATGGCACTTCCGTCAAACCTGGCATCCTCCCCAGCAAGCCCCGACTGGATGAACAAAGCAGACAATGCATGGCAGCTGACAGCCGCAACACTGGTGGGGATGCAAAGCGTGCCGGGCCTCATAATCTTATACGGAGGAGCGGTGAAGAAGAAATGGGCAGTGAATTCAGCATTCATGTCGCTCTATGCGTTTGCGTGTGTTTTCGTGTGTTGGGTGACATGGGGTTACAGGCTGTCATTCGGGGACAAGCTCGTTCCGTTCTGGGGAAAGCCTGCCCTGTCGGTGGACGAGAATTACCTCTTCAAGCCGGCTTTTTTGGGACTGTTCCCAAACGCCACGATGATGTATTTCCAGGGTGTATTTGCGTGCATCACTTTGATCTTGATCGCGGGGGCCCTGTTGGGCCGCATGAATTTCTACGCATGGATGCTGTTCGTGCCTCTCTGGCTCACCTTCTCCTACACCTTCACAGCTTTTAGCATCTGGAGTCCCAATGGGTTTCTGTCCAAGATGGGCTTGATAGACTACTCCGGAGGATACGTCATCCATCTCTCCTCCGGGGTCGCGGGATTCACCGCAGCATATTGGGTGGGCCCGAGGCTAAACAAGGACCGAGAAAGGTTTCCTCCCAACAACATACTGCTGATGCTGGCAGGAGCGGGACTGCTGTGGATGGGCTGGACCGGCTTCAACGGAGGAGACCCTTACTCGGTGAGCATGGACGCCTCCTTGGCCGTGTTGAACACCCACGCCTGCACTGCCACCAGCCTCCTCACCTGGGTCGTGCTCGACGTCATCTTCTTCCGCAAGCCTTCCGTCATCGGTGCGGTTCAAGGCATGATCACCGGCCTCGTTTGCATCACCCCTGCCGCAGGTGTTGTGCAGGGATGGGCTGCCATCCTCATGGGCATATGCTCCGGCTCCATTCCCTGGGTGACCATGATGGTGGTCCACAAGAGATCCAAGCTGCTCCAGAAGGTGGACGACACTATGGCCGTGTTTCACACTCACGCCATCGCCGGGTCTCTCGGAGGAATCCTGTCGGGCCTCTTCGCCGAGCCTAAGCTCAGCTTTCTGTTCTACGGCGCCTACAACGAATACGTGGGCCTCTTCTACGGTCTCCAAATGAACGACTCCAGAACCGGGTTCCGACAGGTCGGGGTCCAACTCCTGGGCATCTTGTACGTCACGCTGCTCAATGTCATCTCCACCAGCTTGATATGTCTGCTCATTCGACTGTTGATGCCTTTAAGGATGTCGGAGGAGGATATGGAGATAGGGGATGAGGCTGCTCACGGGGAAGAAGCGTATGCTATATGGGGCCAGGGTGACAAGCTTGACAGCTCCGTTTCCAAGTATGCGAGTTCCTTGTATGACGATGTTGAGGCTGCGGAGGCCAGGAAGAAGCGTGCGTCGCAAGTTGTTGAGATGACGTAG 1437 0.5595 MALPSNLASSPASPDWMNKADNAWQLTAATLVGMQSVPGLIILYGGAVKKKWAVNSAFMSLYAFACVFVCWVTWGYRLSFGDKLVPFWGKPALSVDENYLFKPAFLGLFPNATMMYFQGVFACITLILIAGALLGRMNFYAWMLFVPLWLTFSYTFTAFSIWSPNGFLSKMGLIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYSVSMDASLAVLNTHACTATSLLTWVVLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAAILMGICSGSIPWVTMMVVHKRSKLLQKVDDTMAVFHTHAIAGSLGGILSGLFAEPKLSFLFYGAYNEYVGLFYGLQMNDSRTGFRQVGVQLLGILYVTLLNVISTSLICLLIRLLMPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLDSSVSKYASSLYDDVEAAEARKKRASQVVEMT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1940g0001 478 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519|GO:0016020|GO:0072488
Prci1940g0001 478 Gene3D Ammonium transporter AmtB like domains 5 441 IPR029020 -
Prci1940g0001 478 Pfam Ammonium Transporter Family 23 437 IPR024041 GO:0008519|GO:0016020|GO:0072488
Prci1940g0001 478 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886
Prci1940g0001 478 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886
Prci1940g0001 478 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886
Prci1940g0001 478 NCBIfam ammonium transporter 21 437 IPR001905 GO:0008519|GO:0016020|GO:0072488
Prci1940g0001 478 SUPERFAMILY Ammonium transporter 16 419 - -
Prci1940g0001 478 FunFam Ammonium transporter 5 440 - -
Prci1940g0001 478 PANTHER AMMONIUM TRANSPORTER MEP2 5 449 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1940g0001 112 477 Inorganic Solute Cotransporters AT2G38290 59.290 3.19e-145 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1940g0001 K03320 - gmx:100787856 778.859