Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1921g0001 ATGACAATGTTACCTGAACTGGGAATAGTGGAGGATCCTACCTTTCTTCATCAATGGCAATTGAACTCTCTGGAAGATCCAAGCTTATTTGAAGAGACCTTACAACAACATTCATTCTCTAACCTAAACCCAACAATGTTCAATCCCAAAACGTCCGTGGAAACTACACTTTGTAGCATTGAAAGGCCCCAGAAACAGTTCAAACCCAACAATAATTGGAGCCCCAACACAAGTGATCAGAACCAGACGTTAGACACAGACTATGATTCTTGTTCCAATCTTCTTTCCTTTGTCAATTCAAGTTACATAAGCCAATTCGGGACATTGCTGAAGCCTAAGGACCAGCAGACACCTTGTCCTGAAATCAACAGTACAATCCCCTCAGACATGTTGGTCTCTTATGGATCCTTGGGAAATCAGAACCTTGTCTTCAATGCAGGACAAGATCCCAGAAAAATTGGAACAAGTCCTAAACTTTCTCAACCTCAGGACCACATAATCGCTGAGCGAAAGCGACGAGAAAAGCTCAGCCAACGGTTCATAGCTCTATCTGCTCTTGTACCTGGCCTCAAAAAGACAGACAAGGCTTCTGTTCTTGGAGATGCTATAAAGTATTTGAAGCAATTGCAAGAGAAGGTTAGGATCCTTGAAGAGGAACAGAGTAGAAAGAGCACTGTGGAATCTGTGGTGGTTGTGAAGAAAACTCAAATATTAGCCAATGAAAGCCATTGTTCTTCAGACTCTGGTGATCACAGTGAGGAGCCATTACCAGAAATTGAAGCCAGAATTTGTGAAAGAAACGTCCTCATAAGAGTTCACTGTGAGAAAAGAACACAAGTGATAGAAAAAACAGTCAGTGAGATAGAGAAACTCCATCTGATAGTCACAAGTACCAGTGTCATGACATTTGGCAGTTCTGCTCTTGATATAACCATAATCGCTCAGATGGATAAGGGCTTTTGCATGACAGTGAAGGAGCTTCTGAGAAGCCTACGCTCAGCTTTTGAATCTTTCATGTGA 1020 0.4196 MTMLPELGIVEDPTFLHQWQLNSLEDPSLFEETLQQHSFSNLNPTMFNPKTSVETTLCSIERPQKQFKPNNNWSPNTSDQNQTLDTDYDSCSNLLSFVNSSYISQFGTLLKPKDQQTPCPEINSTIPSDMLVSYGSLGNQNLVFNAGQDPRKIGTSPKLSQPQDHIIAERKRREKLSQRFIALSALVPGLKKTDKASVLGDAIKYLKQLQEKVRILEEEQSRKSTVESVVVVKKTQILANESHCSSDSGDHSEEPLPEIEARICERNVLIRVHCEKRTQVIEKTVSEIEKLHLIVTSTSVMTFGSSALDITIIAQMDKGFCMTVKELLRSLRSAFESFM 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1921g0001 339 Coils Coil 199 226 - -
Prci1921g0001 339 CDD bHLH_AtNAI1_like 163 234 - -
Prci1921g0001 339 Gene3D - 160 233 IPR036638 GO:0046983
Prci1921g0001 339 MobiDBLite consensus disorder prediction 65 84 - -
Prci1921g0001 339 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 222 IPR036638 GO:0046983
Prci1921g0001 339 PANTHER BHLH TRANSCRIPTION FACTOR 28 335 - -
Prci1921g0001 339 Pfam Helix-loop-helix DNA-binding domain 163 210 IPR011598 GO:0046983
Prci1921g0001 339 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 209 IPR011598 GO:0046983
Prci1921g0001 339 SMART finulus 166 215 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1921g0001 10 339 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 38.053 3.29e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Prci1921g0001 HLH 2.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1921g0001 - - gmx:100798018 409.068