Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1892g0005 ATGGCTGCTCACTTTCACCCGCGTAATGCTATCCAATTCTTCAAGATTATTCTCCAATACTCTCTCGAAGAAGGAAAGCTTAAGGTACCAGACAAATTTGTACGGAGATATGGAGGTGGAATGCCAAATCCAGTGTTTCTGAAGCCTCCAGATGGAACTCAATGGGAAATACGCTGGACAAAATATAAAAGTGGAGAAGTTTGGTTTGAGAAGGGTTGGGATGATGTTGTTAGATACTACTCTCTAGGTCATGGCCATTTGGTGTTGTTCAAATATGTGGGAACTAGAACTTGTCATTTTGAGGTCAACATTTTTGACAAGAGTGCCCTAGAAATGGACTACTCTCTTCATGGAAACCTCCAACAAGTTACTGATAATTCTGACTCGGTTGAAATCTTGTGTCAGAAACCTCCTCTGCAAAAAGTAGCGAGCCGAAAACTGCCATTATCATCTTCTGTTCACCCTTGCAAGAAAATTAGAGCTGAAGAAGCTCAAAGGACCTATAATCAGCAAAAGATGCACTCAGGTGATGGGAATGAGCTCAAGTCCATTAATGCAGAACCGAAACTTATAAAGCTTGAGTTAGAAGTTTCTGCAGAAACTATGGGTGGAAGCAATTTTTCCACTAAAAAAGGTCCAAAATCCATTGCTATCAAAAAACGAAGGGAGAAACCATTAACTTGTGCTGAGAAGGACAGGGCTTTACAAAGAGTCAACACTTTCACGTCTAAAAATCCCTACTTCAAAATTGTCATGCAGCCAGCATACATCAAGAGCTGTTTGTGTGTGCCAGCAAAGTTTGTGAAACAGTGTTTGAAGAAGAAGAAGGAAGGAACTGTCCTCCTCCGGGTTTCAGATGGTAGAACTTGGCGTGTGGAGTGCAGTGGGGAAGAAAGAAAGCAGTACAAGTTCCGACTCAGAAGTGGGTGGTCCTCTTTTTCAAAAGACAATAACTTGAAAGTGGGTGATGTGTGTGTTTTTGAACTCACAAACACCACTGACATCTCCTTCCTGGTTCATGTTTTTGGAGATTTTGTTAATCCATATGGCTGA 1053 0.4141 MAAHFHPRNAIQFFKIILQYSLEEGKLKVPDKFVRRYGGGMPNPVFLKPPDGTQWEIRWTKYKSGEVWFEKGWDDVVRYYSLGHGHLVLFKYVGTRTCHFEVNIFDKSALEMDYSLHGNLQQVTDNSDSVEILCQKPPLQKVASRKLPLSSSVHPCKKIRAEEAQRTYNQQKMHSGDGNELKSINAEPKLIKLELEVSAETMGGSNFSTKKGPKSIAIKKRREKPLTCAEKDRALQRVNTFTSKNPYFKIVMQPAYIKSCLCVPAKFVKQCLKKKKEGTVLLRVSDGRTWRVECSGEERKQYKFRLRSGWSSFSKDNNLKVGDVCVFELTNTTDISFLVHVFGDFVNPYG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1892g0005 350 SUPERFAMILY DNA-binding pseudobarrel domain 241 343 IPR015300 -
Prci1892g0005 350 ProSiteProfiles B3 DNA-binding domain profile. 12 108 IPR003340 GO:0003677
Prci1892g0005 350 CDD B3_DNA 246 342 IPR003340 GO:0003677
Prci1892g0005 350 PANTHER B3 DOMAIN-CONTAINING 9 340 - -
Prci1892g0005 350 Pfam B3 DNA binding domain 248 342 IPR003340 GO:0003677
Prci1892g0005 350 Pfam B3 DNA binding domain 14 107 IPR003340 GO:0003677
Prci1892g0005 350 CDD B3_DNA 13 106 IPR003340 GO:0003677
Prci1892g0005 350 Gene3D - 226 345 IPR015300 -
Prci1892g0005 350 Gene3D - 6 109 IPR015300 -
Prci1892g0005 350 ProSiteProfiles B3 DNA-binding domain profile. 246 345 IPR003340 GO:0003677
Prci1892g0005 350 SMART B3_2 13 108 IPR003340 GO:0003677
Prci1892g0005 350 SMART B3_2 247 345 IPR003340 GO:0003677
Prci1892g0005 350 SUPERFAMILY DNA-binding pseudobarrel domain 11 115 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1892g0005 13 342 B3 DNA Binding Superfamily AT3G18990 27.457 1.23e-33 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci1892g0005 B3 7.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1892g0005 - - pcin:129311873 716.842