Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1892g0004 ATGGCTGCTCACTTTCACCCGCGTAATGCTATCCAATTCTTCAAGATTATTCTCCAATACTCTCTCGAAGAAGGAAAGCTTGTACCAGACAAATTTGTACGGAGATATGGAGGTGGAATGCCAAATCCAGTGTTTCTGAAGCCTCCAGATGGAACTCAATGGGAAATACGCTGGACAAAATATAAAAGTGGAGAAGTTTGGTTTGAGAAGGGTTGGGATGATGTTGTTAGATACTACTCTCTAGGTCATGGCCATTTGGTGTTGTTCAAATATGTGGGAACTAGAACTTGTCATTTTGAGGTCAACATTTTTGACAAGAGTGCCCTAGAAATGGACTACTCTCTTCATGGAAACCTCCAACAAGTTACTGATAATTCTGACTCGGTTGAAATCTTGTGTCAGAAACCTCCTCTGCAAAAAGTAGCGAGCCGAAAACTGCCATTATCATCTTCTGTTCACCCTTGCAAGAAAATTAGAGCTGAAGAAGCTCAAAGGACCTATAATCAGCAAAAGATGCACTCAGGTGATGGGAATGAGCTCAAGTCCATTAATGCAGAACCGAAACTTATAAAGCTTGAGTTAGAAGTTTCTGCAGAAACTATGGGTGGAAGCAATTTTTCCACTAAAAAAGGTCCAAAATCCATTGCTATCAAAAAACGAAGGGAGAAACCATTAACTTGTGCTGAGAAGGACAGGGCTTTACAAAGAGTCAACACTTTCACGTCTAAAAATCCCTACTTCAAAATTGTCATGCAGCCAGCATACATCAAGAGCTGTTTGTGTGTGCCAGCAAAGTTTGTGAAACAGTGTTTGAAGAAGAAGAAGGAAGGAACTGTCCTCCTCCGGGTTTCAGATGGTAGAACTTGGCGTGTGGAGTGCAGTGGGGAAGAAAGAAAGCAGTACAAGTTCCGACTCAGAAGTGGGTGGTCCTCTTTTTCAAAAGACAATAACTTGAAAGTGGGTGATGTGTGTGTTTTTGAACTCACAAACACCACTGACATCTCCTTCCTGGTTCATGTTTTTGGAGATTTTGTTAATCCATATGGCTGA 1050 0.4143 MAAHFHPRNAIQFFKIILQYSLEEGKLVPDKFVRRYGGGMPNPVFLKPPDGTQWEIRWTKYKSGEVWFEKGWDDVVRYYSLGHGHLVLFKYVGTRTCHFEVNIFDKSALEMDYSLHGNLQQVTDNSDSVEILCQKPPLQKVASRKLPLSSSVHPCKKIRAEEAQRTYNQQKMHSGDGNELKSINAEPKLIKLELEVSAETMGGSNFSTKKGPKSIAIKKRREKPLTCAEKDRALQRVNTFTSKNPYFKIVMQPAYIKSCLCVPAKFVKQCLKKKKEGTVLLRVSDGRTWRVECSGEERKQYKFRLRSGWSSFSKDNNLKVGDVCVFELTNTTDISFLVHVFGDFVNPYG 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1892g0004 349 Gene3D - 6 108 IPR015300 -
Prci1892g0004 349 SMART B3_2 246 344 IPR003340 GO:0003677
Prci1892g0004 349 SMART B3_2 13 107 IPR003340 GO:0003677
Prci1892g0004 349 ProSiteProfiles B3 DNA-binding domain profile. 11 107 IPR003340 GO:0003677
Prci1892g0004 349 SUPERFAMILY DNA-binding pseudobarrel domain 240 342 IPR015300 -
Prci1892g0004 349 Gene3D - 225 344 IPR015300 -
Prci1892g0004 349 CDD B3_DNA 13 105 IPR003340 GO:0003677
Prci1892g0004 349 SUPERFAMILY DNA-binding pseudobarrel domain 10 107 IPR015300 -
Prci1892g0004 349 CDD B3_DNA 245 341 IPR003340 GO:0003677
Prci1892g0004 349 PANTHER B3 DOMAIN-CONTAINING 9 339 - -
Prci1892g0004 349 ProSiteProfiles B3 DNA-binding domain profile. 245 344 IPR003340 GO:0003677
Prci1892g0004 349 Pfam B3 DNA binding domain 14 106 IPR003340 GO:0003677
Prci1892g0004 349 Pfam B3 DNA binding domain 247 341 IPR003340 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1892g0004 13 341 B3 DNA Binding Superfamily AT3G18990 27.457 1.52e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci1892g0004 B3 7.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1892g0004 - - pcin:129311873 710.294