Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1887g0001 GTTTGTCTAAATGGCTATCAGCCATCATCAACCAGCTTTTCAATTGGTTCTGGGGGAACCATGTCATCAATGGGGGTGCAGAGAATCACAAGCCAGATGATTCCCACTCCTGGTTTTAATGGCAGCAATAACTCATACATGAATATAGAATCTTCTGATATAGTGCTGTCTTTTCCAGTGTTGAATCCTCGACGATGTCACAGCCTCTGCAGCAGAAACAGAAATTTTGGGGGCCAAAACAATAATGTGATGCAGAACCTTGGCAACCAAATGGGTAGTGGAATGAGATCTGGTTTACAGCAAAAATCTATTGCATACTCAAATGGAGCCAGTAGCGGGTTAGGTTTGATTGCAAACAATAGGCAACTTACAAATGAATCTGGCTTTGGTGATGCCTATGCCACAACTGTGAATTCCCCTCAACACTCACAGCAGCACTTTGATCAAAATCAGCAACCGCCAGTGCATGGTGATGGATATGGATTAAATAATGTTGACTCATATGCATCTGGAAACTTTTATACATCTGCAACATCTTCTGGATCTATGATGAGCAGTCAGAACTTGAACTCAGTAAAATTGCCTGCAATATCCCAAACCAACTCTCTCATAAGTAGTCATTCGAATTTACATGGTATGCAGCAGGATGCTCATCTAAAGTCTCAAGCTATGAATCGGTTGGAGAAGTTGAATTTTCAGTCTTCTTTCACTTCCAAAGATAGCCTTCTGGATCCTCAACAGCAATATCTGCAACATTCCCAACAATTTCAACAGCCAGAGCAGTATGCTCCACAGCAATTTGAACAGTCAGAGCAGTATGCCCAGAAGCAATTTCAATTTAAGCTGCAAAGTCAGCAGCCCCAGCATTTGGTCAAAAGTGATGCCTTCAGTCAGTCTCATATCTCTTCCAATTTAGAAGTCCAAGTGAAGTCTGAGCCTGTAATTGATCACCACAAAGAAGTCTTCAGTTCACAGGTTTCTGAACAGTTTAATATTTCTGAGATGCAAAACAAGATGCAAAAGAACTCTAATGATAGTTGTTTGGGGGATGCCCAACATCTTTCTTTTCCAAATAGTCAGAGTGATTTATCTGCAACAACAGCTCAAAACTCACATCAAATGTTGCACCCGCATCAAATGGTTTCAGAGTCTGAAAATAATTTTAGTTGTCTTTCAGTTGGGACACAATCTAAATCAGCACTTCTAAATCAATGGAATTCTCAATCGCAAGGTGGTAACCACATACCAGGGAATATGTTGCATGAGCAACATCTCCACATGGATTTCCATCAGAGAATATCAAGGCAAGATGAAGCTCAGTGCAATAATTTATCATCAGATGGAAATGTTATTGGTCAAGCTGTTTCTTCTAGAGGCACTGAACCACTTGACTCAAGTGTTAGTATTAAGAAAGCACATAGGAATCAACAGAGGTGGCTTTTATTTCTACTTCATGCTCGACGGTGTCCTGCCCCAGAAGGACGATGCCAAGAACGTTATTGTTATAGTGCTCAGAAGTTATGCAGACACATTGATGGATGCAACCTGCCTCATTGCTCATATCCCCGCTGTCATCATACCAGGCTATTGCTAATTCATTTTAGAAACTGCAAAGATCCATGTTGCCCAGTTTGTGTTTTTGTTCGAAATTACAGGCGCTCTTTTCAAGTCAAGTCCCAGACTCGGCCAGATTCTGATTCAGGAGTGCCAGTTGCAGCAAATGGATCTTGTAAACCATATAATTCTGTGGTTCCATCACCTAGATTGATCCAAAAACCTCTACCCATTATTGAAACTTCAGATGACCTGCGGCCATCTTTAAAACGTATGAAAATTGAGCAGTGTACCCAGTCCTTTAGTTTGGAGAATGAAAACTCTACTGTGTCAGTTTTGGCAAACTGTGAATCTAATGTTTCCAAGGATGCCCCGTGCCAAGACTATATCCATGGTGATATGTCAATGTCAAAATCTGAGCTTACAGAAGTTAAGGCTGAAGGTCTAGTGCATTCAACACCTGCAAATCCTTGTGAAATGAAAATAAATGATGTGGAGGACAGATGGCCTGGTGGTGAACCTGTCGCATATGATGAACCTGTCTCTTTAGCTAGGCCAGAAAATATCAAAACTGAGAAAGAAACTGGACAAGATCACCCAGAAAACCTTAACCAGCCATCAGAAAATTTTGGAGGGACAAAGTCTGGTAAGCCTAAAATAAAGGGGGTCTCGTTGACTGAACTATTCACTCCAGAACAAGTCAGGGAGCACATCACTGGCCTAAGACAATGGGTTGGCCAGAGCAAAGCGAAGGCTGAAAAGAATCAAGCAATGGAGCATTCAATGAGTGAGAACTCCTGTCAGTTGTGTGCTGTAGAGAAGCTTACATTTGAACCACCACCTATTTATTGCTCAACTTGTGGTGGTCGCATTAAACGGAACGCTATGTATTATACCATGGGTACTGGCGATACACGGCATTATTTTTGTATTCCATGCTATAACGAGGCACGTGGAGACAGCATTTTTGTCGATGGAACTGCCATTCCTAAGGCGAGGCTGGAGAAAAAGAAAAATGATGAAGAAACTGAGGAATGGTGGGTTCAATGTGATAAATGTGAAGCTTGGCAACACCAAATTTGTGCACTATTTAATGGTCGAAGAAATGATGGGGGACAAGCTGAGTACACTTGCCCTAATTGCTATATTCAAGAGGTAGAAAGAGGAGAGCGCAAACCATTACCCCAAAGTGCTGTTCTTGGGGCTAAGGATTTGCCTAAAACTATTCTCAGTGAGCAAATACAGCAACGGTTGTCTAGGAGACTAGAACAAGAGAGACAAGAGAGGGCAAGGCTTCAAGGAAAAAGTCGCGATGAGGTGCCTGGGGCTGAAGAACTTGTTGTAAGAGTGGTGTCATCTGTGGACAAGAAGTTAGAAGTGAAACAACGATTTTTGGAAATTTTCCGGGAAGAAAATTATCCAACAGAATTCCCATATAAATCTAAGGTAGTTTTGTTGTTTCAAAAGATTGAAGGTGTGGAAGTATGCCTTTTTGGCATGTATGTTCAAGAATTTGGATCTGAATGCCAGTTCCCTAATCAGCGTCGGGTATATCTTTCATACCTTGATTCTGTGAAGTATTTTAGGCCTGAAGTTAAAGCAGTGACTGGAGAGGCTCTTCGGACGTTTGTTTATCATGAAATCTTGATTGGATACCTCGAATATTGTAAGAAACGTGGTTTTACTAGCTGCTATATTTGGGCCTGTCCTCCATTGAAGGGTGAAGATTATATTTTATATTGTCATCCGGAAATTCAGAAAACTCCAAAATCGGATAAGCTCCGAGAATGGTACTTGTCAATGTTAAGAAAAGCTTCCAAGGAGAATATTGTGGTCGATCTTACCAACTTGTACGACCATTTCTTTGTATCTACTGGTGAATGTAGAGCTAAGGTTACTGCTGCAAGGCTTCCTTATTTTGATGGTGACTATTGGCCCGGGGCTGCTGAGGATTTGATTTATCAGCTTAACCAAGAAGAAGATGGCAGAAAACTGAATAAGAAAGGAACAACCAAAAAAACCATAACAAAAAGGGCTTTAAAGGCATCTGGTCAGTCAGATCTCTCTGGAAATGCTTCAAAAGATCTACTCCTAATGCATAAACTTGGCGAAACCATTAGCCCCATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCAGTCATTGTTGTATTTTAATGGTATCAGGCAACCGTTGGGTTTGCAACCAGTGCAAGAATTTTCAGATATGTGATAAGTGTTATGAAGTTGAACTAAAGCGTGAAGAAAGAGAAAGGCATCCTATTAATCATAGGGAGAAACATGCTCTTTACGGAATTGAAATTTCTGATGTACCAGCTGATACAAAGGACAAAGATGAGATTCTTGAAAGTGAATTCTTTGACACTAGACAGGCATTTCTTAGTCTGTGTCAGGGGAACCACTATCAATATGATACTTTGAGACGGGCCAAGCATTCATCAATGATGGTCCTCTATCATCTTCATAATCCAACTGCTCCTGCTTTTGTGACAACTTGTAATATATGCCATCTTGACATTGAAACTGGTCAAGGTTGGCGATGTGAAGTTTGCCCTGATTATGATGTGTGCAATGCGTGTTATCAAAAGGATGGAGGTGTTGATCATCCTCATAAGTTGACAAATCATCCGTCTGTGGCTGATCGTGATGCTCAGAACAAAGAAGCAAGGCAGCTTCGAGTGTTGCAGTTGCGGAAAATGCTTGATCTTCTCGTGCATGCATCCCAATGTCGTTCTGCACATTGCCAGTATCCCAATTGTCGCAAAGTGAAGGGGCTCTTCCGCCATGGGATGCAATGTAAAACACGTGCCTCCGGAGGCTGTGTTCTTTGCAAGAAAATGTGGTATCTGCTGCAACTCCATGCTCGTGCTTGCAAAGAATCTGAGTGCCACGTACCACGTTGCAGAGATCTGAAAGAACATTTAAGGAGGTTACAGCAACAATCGGACTCTCGACGAAGAGCAGCCGTGATGGAAATGATGAGACAGAGAGCTGCCGAAGTTGCCAGCAATGCAGGATAA 4602 0.417 VCLNGYQPSSTSFSIGSGGTMSSMGVQRITSQMIPTPGFNGSNXNSYMNIESSDIVLSFPVLNPRRCHSLCSRNRNFGGQNNNVMQNLGNQMGSGMRSGLQQKSIAYSNGAMXSGLGLIANNRQLTNESGFGDAYATTXVNSPQHSQQHFDQNQQPPVHGDGYGLNNVDSYASGNFYTSATSSGSMMSSQNLNSVKLPAISQTNSLISSHSNLHGMQQDAHLKSQAMNRLEKLNFQSSFTSKDSLLDPQQQYLQHSQQFQQPEQYAPQQFEQSEQYAQKQFQFKLQSQQPQHLVKSDAFSQSHISSNLEVQVKSEPVIDHHKEVFSSQVSEQFNISEMQNKMQKNSNDSCLGDAQHLSFPNSQSDLSATTAQNSHQMLHPHQMVSESENNFSCLSVGTQSKSALLNQWNSQSQGGNHIPGNMLHEQHLHMDFHQRISRQDEAQCNNLSSDGNVIGQAVSSRGTEPLDSSVSIKKAHRNQQRWLLFLLHARRCPAPEGRCQERYCYSAQKLCRHIDGCNLPHCSYPRCHHTRLLLIHFRNCKDPCCPVCVFVRNYRRSFQVKSQTRPDSDSGVPVAANGSCKPYNSVVPSPRLIQKPLPIIETSDDLRPSLKRMKIEQCTQSFSLENENSTVSVLANCESNVSKDAPCQDYIHGDMSMSIXSELTEVKAEGLVHSTPANPCEMKINDVEDRWPGGEPVAYDEPVSLARPENIKTEKETGQDHPENLNQPSENFGGTKSGKPKIKGVSLTELFTPEQVREHITGLRQWVGQSKAKAEKNQAMEHSMSENSCQLCAVEKLTFEPPPIYCSTCGGRIKRNAMYYTMGTGDTRHYFCIPCYNEARGDSIFVDGTAIPKARLEKKKNDEETEEWWVQCDKCEAWQHQICALFNGRRNDGGQAEYTCPNCYIQEVERGERKPLPQSAVLGAKDLPKTILSEQIQQRLSRRLEQERQERARLQGKSRDEVPGAEELVVRVVSSVDKKLEVKQRFLEIFREENYPTEFPYKSKVVLLFQKIEGVEVCLFGMYVQEFGSECQFPNQRRVYLSYLDSVKYFRPEVKAVTGEALRTFVYHEILIGYLEYCKKRGFTSCYIWACPPLKGEDYILYCHPEIQKTPKSDKLREWYLSMLRKASKENIVVDLTNLYDHFFVSTGECRAKVTAARLPYFDGDYWPGAAEDLIYQLNQEEDGRKLNKKGTTKKTITKRALKASGQSDLSGNASKDLLLMHKLGETISPMKEDFIMVHLQHACSHCCILMVSGNRWVCNQCKNFQICDKCYEVELKREERERHPINHREKHALYGIEISDVPADTKDKDEILESEFFDTRQAFLSLCQGNHYQYDTLRRAKHSSMMVLYHLHNPTAPAFVTTCNICHLDIETGQGWRCEVCPDYDVCNACYQKDGGVDHPHKLTNHPSVADRDAQNKEARQLRVLQLRKMLDLLVHASQCRSAHCQYPNCRKVKGLFRHGMQCKTRASGGCVLCKKMWYLLQLHARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRAAEVASNAG 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1887g0001 1537 CDD PHD_HAC_like 831 903 - -
Prci1887g0001 1537 Pfam Zinc finger, ZZ type 1361 1403 IPR000433 GO:0008270
Prci1887g0001 1537 SUPERFAMILY FYVE/PHD zinc finger 865 905 IPR011011 -
Prci1887g0001 1537 ProSiteProfiles Zinc finger ZZ-type profile. 1239 1302 IPR000433 GO:0008270
Prci1887g0001 1537 FunFam Histone acetyltransferase HAC1 1358 1409 - -
Prci1887g0001 1537 Gene3D - 799 859 IPR038547 -
Prci1887g0001 1537 Pfam TAZ zinc finger 1429 1499 IPR000197 -
Prci1887g0001 1537 Pfam TAZ zinc finger 480 548 IPR000197 -
Prci1887g0001 1537 ProSiteProfiles Zinc finger ZZ-type profile. 1359 1412 IPR000433 GO:0008270
Prci1887g0001 1537 SMART TAZ_2 473 551 IPR000197 -
Prci1887g0001 1537 SMART TAZ_2 1422 1500 IPR000197 -
Prci1887g0001 1537 FunFam Histone acetyltransferase of the CBP family 12 1235 1294 - -
Prci1887g0001 1537 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 860 904 IPR013083 -
Prci1887g0001 1537 Gene3D TAZ domain 470 571 IPR035898 -
Prci1887g0001 1537 Gene3D TAZ domain 1416 1533 IPR035898 -
Prci1887g0001 1537 Gene3D - 1358 1409 IPR043145 -
Prci1887g0001 1537 Coils Coil 937 957 - -
Prci1887g0001 1537 FunFam Histone acetyltransferase HAC1-like protein 1416 1533 - -
Prci1887g0001 1537 SUPERFAMILY TAZ domain 1421 1504 IPR035898 -
Prci1887g0001 1537 Gene3D - 1235 1296 IPR043145 -
Prci1887g0001 1537 ProSiteProfiles Zinc finger TAZ-type profile. 470 551 IPR000197 -
Prci1887g0001 1537 MobiDBLite consensus disorder prediction 134 165 - -
Prci1887g0001 1537 SMART zz_5 1238 1282 IPR000433 GO:0008270
Prci1887g0001 1537 SMART zz_5 1358 1404 IPR000433 GO:0008270
Prci1887g0001 1537 SUPERFAMILY RING/U-box 1340 1408 - -
Prci1887g0001 1537 ProSiteProfiles Zinc finger TAZ-type profile. 1419 1502 IPR000197 -
Prci1887g0001 1537 MobiDBLite consensus disorder prediction 134 155 - -
Prci1887g0001 1537 SUPERFAMILY RING/U-box 1219 1289 - -
Prci1887g0001 1537 ProSitePatterns Zinc finger PHD-type signature. 832 903 IPR019786 -
Prci1887g0001 1537 MobiDBLite consensus disorder prediction 246 268 - -
Prci1887g0001 1537 MobiDBLite consensus disorder prediction 707 741 - -
Prci1887g0001 1537 SMART PHD_3 805 904 IPR001965 -
Prci1887g0001 1537 SUPERFAMILY TAZ domain 476 555 IPR035898 -
Prci1887g0001 1537 MobiDBLite consensus disorder prediction 707 721 - -
Prci1887g0001 1537 Pfam PHD-finger 862 904 IPR019787 -
Prci1887g0001 1537 ProSiteProfiles CBP/p300-type histone acetyltransferase (HAT) domain profile. 921 1357 IPR031162 GO:0004402
Prci1887g0001 1537 PANTHER CBP/P300-RELATED 182 1528 IPR013178 GO:0004402|GO:0006355|GO:0016573
Prci1887g0001 1537 MobiDBLite consensus disorder prediction 340 370 - -
Prci1887g0001 1537 Pfam Histone acetylation protein 960 1177 IPR013178 GO:0004402|GO:0006355|GO:0016573
Prci1887g0001 1537 ProSitePatterns Zinc finger ZZ-type signature. 1364 1391 IPR000433 GO:0008270
Prci1887g0001 1537 SMART KAT11_2 954 1251 IPR013178 GO:0004402|GO:0006355|GO:0016573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Prci1887g0001 HAT_KAT11 1.1e-31 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1887g0001 K04498 - gmx:100809207 2384.37