Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1881g0002 ATGCAGATCTTCGTCAAAGCTTTGACCGGAAAGACTATCACTCTCGAGGTCGAGAGTAGCGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCCCCTGACCAGCAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGCACTCTTGCTGATTATAACATTCAAAAGGAATCAACACTTCATTTGGTTCTGAGGCTTAGAGGAGGAACCATGATTAAAGTGAAGACACTTACTGGAAAAGAAATTGAAATTGACATTGAGCCAACTGATACCATTGACCGGATCAAGGAACGTGTTGAAGAGAAAGAGGGAATTCCACCTGTTCAGCAGAGGCTCATATATGCCGGGAAGCAGCTGGCAGATGACAAAACAGCTAAAGAGTACAACATTGAAGGTGGTTCTGTGCTTCACCTGGTGCTTGCCCTTAGGGGTGGTAGTCTTTATGTATAA 471 0.4522 MQIFVKALTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKEYNIEGGSVLHLVLALRGGSLYV 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1881g0002 156 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Prci1881g0002 156 SUPERFAMILY Ubiquitin-like 79 152 IPR029071 -
Prci1881g0002 156 Gene3D - 78 154 - -
Prci1881g0002 156 Gene3D - 1 77 - -
Prci1881g0002 156 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Prci1881g0002 156 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Prci1881g0002 156 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Prci1881g0002 156 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Prci1881g0002 156 PANTHER UBIQUITIN 1 78 - -
Prci1881g0002 156 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Prci1881g0002 156 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Prci1881g0002 156 SMART ubq_7 77 148 IPR000626 GO:0005515
Prci1881g0002 156 SMART ubq_7 1 72 IPR000626 GO:0005515
Prci1881g0002 156 CDD Ubl_ubiquitin 1 76 - -
Prci1881g0002 156 FunFam NEDD8 protein 77 154 - -
Prci1881g0002 156 CDD Ubl_NEDD8 79 152 IPR038738 -
Prci1881g0002 156 FunFam Polyubiquitin 3 1 76 - -
Prci1881g0002 156 PRINTS Ubiquitin signature 11 31 IPR019956 -
Prci1881g0002 156 PRINTS Ubiquitin signature 53 74 IPR019956 -
Prci1881g0002 156 PRINTS Ubiquitin signature 32 52 IPR019956 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1881g0002 1 76 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.684 1.03e-49 154