Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1861g0003 ATGATGGCTACAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCTGATGAGAGCTACCACTTTGAGAGGCTGCATATTGAGCCTATTTATGATGCCTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACATTGGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGTAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAAAGCATAGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCAGCGCAGCTGGACATGGCTCGCAGGTCATTGAACATGGGTAGTCCTGAAAATGATACATTACAGGCTTTACATTATGTCCAACACATCTGCCAAAGAAGCCGGTCTAATAAGCATCTTGTCCGTAGTGCGGGGCTTATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACGGCTTTGGGAACCCTTAGGATTGTCGTGGAAGAAGACAATGAGAATAAGGTTGTCACAGGACTTGTTGGCTGA 582 0.4467 MMATSWDGSNDPGSQSDESYHFERLHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSIELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYVQHICQRSRSNKHLVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVEEDNENKVVTGLVG 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1861g0003 193 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 151 193 IPR000225 GO:0005515
Prci1861g0003 193 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 19 186 - -
Prci1861g0003 193 SMART arm_5 140 180 IPR000225 GO:0005515
Prci1861g0003 193 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Prci1861g0003 193 SUPERFAMILY RING/U-box 23 111 - -
Prci1861g0003 193 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 106 IPR013083 -
Prci1861g0003 193 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Prci1861g0003 193 CDD RING-Ubox_PUB 31 88 IPR045210 -
Prci1861g0003 193 Gene3D - 107 190 IPR011989 -
Prci1861g0003 193 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Prci1861g0003 193 Pfam Armadillo/beta-catenin-like repeat 142 176 IPR000225 GO:0005515
Prci1861g0003 193 SUPERFAMILY ARM repeat 105 187 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1861g0003 21 190 U-box Gene Family AT1G20780 61.765 4.45e-68 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1861g0003 - - pcin:129301062 377.867