Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1861g0002 ATGATGGCTACAAGCTGGGATGGAAGTAATGACCCTGGCAGCCAGTCTGATGAGAGCTACCACTTTGAGAGGCTGCATATTGAGCCTATTTATGATGCCTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACATTGGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGTAAACTAGTTTGCCCTTTGACTCTGAAAGAACTAAAAAGCATAGAACTAAATCCCAGTATTGCTTTGCGTAACACCATTGAAGAGTGGACTGCAAGGAATGAAGCAGCGCAGCTGGACATGGCTCGCAGGTCATTGAACATGGGTAGTCCTGAAAATGATACATTACAGGCTTTACATTATGTCCAACACATCTGCCAAAGAAGCCGGTCTAATAAGCATCTTGTCCGTAGTGCGGGGCTTATACCTATGATTGTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTACGGCTTTGGGAACCCTTAGGATTGTCGTGGAAGAAGACAATGAGAATAAGGACTTGTTGGCTGAAGGGGATACTGTGCGCACAATAGTAAAATTCCTTTCTCATGAACTCTCTAAAGAAAGAGAGGAAGCTGTGTCTTTGCTTTATGAGCTCTCAAAATCAGAAACTTTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTAATATTAGTTGGAATGACAAGCAGCAAATCAGAAGATATCTTGACTGTGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAAATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGA 852 0.4272 MMATSWDGSNDPGSQSDESYHFERLHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSIELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYVQHICQRSRSNKHLVRSAGLIPMIVDMLKSSSRKVRCTALGTLRIVVEEDNENKDLLAEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVRRLKKHWRIWKSVRIMCDKWLKMVDCSLF 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1861g0002 283 SMART arm_5 140 180 IPR000225 GO:0005515
Prci1861g0002 283 SMART arm_5 182 222 IPR000225 GO:0005515
Prci1861g0002 283 SUPERFAMILY RING/U-box 23 111 - -
Prci1861g0002 283 Pfam Armadillo/beta-catenin-like repeat 142 176 IPR000225 GO:0005515
Prci1861g0002 283 Gene3D - 107 272 IPR011989 -
Prci1861g0002 283 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 20 258 - -
Prci1861g0002 283 SMART Ubox_2 33 101 IPR003613 GO:0004842|GO:0016567
Prci1861g0002 283 Pfam U-box domain 32 106 IPR003613 GO:0004842|GO:0016567
Prci1861g0002 283 CDD RING-Ubox_PUB 31 88 IPR045210 -
Prci1861g0002 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 106 IPR013083 -
Prci1861g0002 283 ProSiteProfiles U-box domain profile. 29 108 IPR003613 GO:0004842|GO:0016567
Prci1861g0002 283 SUPERFAMILY ARM repeat 105 251 IPR016024 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1861g0002 21 256 U-box Gene Family AT1G20780 65.254 1.60e-102 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1861g0002 - - pcin:129301062 567.385