Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1831g0001 ATGGAAAGCCATAATAGCAGTATTGAATGCCGGTGGAGAGCTGAAGAAGTCATTGGTGGGAACGCGAAAGCTCTTCAAGCTCTCAGAGAACTCATCATATTCCCGCTTCTCTACTCTCACCAAGCTAAGAAGCTCGGTGTCAAATGGCCGCAAGGTTTGCTTCTGTATGGTCCTCCAGGCACTGGAAAGACAAGTCTAGTACGGGCAGTTGTTCAGGAATGTGGAGCACATTTGACAGTTATCAGTCCTCATTCTGTCCATAAAGCACATGCTGGGGAAAGTGAGAGAATTCTTCGCGAGGCCTTTTCAGAGGCATCATCTCATTCAAATTGTGGCAAGCCATCGGTTATCTTTATAGATGAAATAGATGTACTCTGTCCTCACCGTAATTCCAGAAGGGAGCAAGATGTTCGAATTGCTTCCCAACTCTTTACATTGATGAATTCGAATAAGCCATCCTCAGCTATGCCAAGAGTTGTTGTGGTTGCATCAACTAACAGAGTGAATGCAATTGACCCTGCCCTTAGAAGGTATGGACGTTTTGATGCCGAAATTGAAGTTACTGCCCCAAATGAAGAGGAGCGCTTTCAAATTCTCAAGCTTTATACAAAGAAGATTCCCTTGGATCCTGGTGTTGACTTAAAAATGATTGCTGCATCTTGCAATGGATATGTTGGGGCTGATTTGGAGGCTTTGTGCCGTGAGGCTACTATATTAGCAGCTAAAAGGTTCAAAAGTGAAAATGAAAATGCTAGTAATTTAAACATAATGGTGGAAGATTGGAACAATGCCAGAGCTATGGTTGGTCCCAGCATTACAAGAGGTGTTACAGTGGAAATTCCTAAAGTGACTTGGGAGGATATTGGGGGATTAAAAGAATTGAAGAAAAAGCTCCAGCAAGCTGTTGAATGGCCTATCAAGCATTCAGAAGCATTTTCAAGATTAGGCATTTCTCCTGTACGTGGGATTCTTTTGCATGGGCCTCCAGGATGTTCCAAAACAACGCTTGCAAAAGCTGTTGCAAATGCTGCCCAAGCTTCTTTCTTTTCCTTGAGTGGTGCAGAAATGTATTCGATGTATGTTGGAGAGGGGGAAGCATTGCTCCGTAACACATTTCAGAGAGCACGCCTGGCAGCACCAAGCATAATATTTTTCGATGAGGCTGATGTGGTAGCTGCCAAGCGGGGTGATTTTTCAAGCAATAGCAGTACAGTTGGAGAAAGGCTTTTGTCGACTCTTCTGACTGAGATGGATGGTTTAGAGGAAGCTACTGGAATTCTTGTTTTGGCGGCTACGAATCGCCCTTATGCAATAGATGCTGCCCTTATGCGCCCTGGACGTTTTGATCTGGTGCTGTATGTTCCCCCACCTGATTCAGAAGCTCGATATGAAATACTGTGTGTCCATACACGTGGCATGAAACTAGGGAGTGATGTCAATCTCAGAAGACTAGCAGATGATACCGAGTTTTTCACAGGCGCTGAACTTGAGGGTTTATGCAAGGAAGCTGGAATTGTTGCTCTGAGAGAAAATATCTCTGCTACTGCCGTGTGTGATCGCCATTTCCAGGTGGTGAGGAATTCTGTAAATCCAGCATTAACAAAAGAAGAAATTGATTCTTACTCATCTTTCATGAAGACCTCATCATCAGCATTTTCTAGGCATTTCAAATCAAGTTCAAAACTTGATAATAAGAGAAGTAATATCTTAGGTTCCATGGCTAAACTAGGTATTGTCGGCTGTCTGCTACTTGCTGCTACTAAATACTTTTTCATGCATGAAGAACAATCTGTATATGAAGTAGCTATCACCTGA 1815 0.432 MESHNSSIECRWRAEEVIGGNAKALQALRELIIFPLLYSHQAKKLGVKWPQGLLLYGPPGTGKTSLVRAVVQECGAHLTVISPHSVHKAHAGESERILREAFSEASSHSNCGKPSVIFIDEIDVLCPHRNSRREQDVRIASQLFTLMNSNKPSSAMPRVVVVASTNRVNAIDPALRRYGRFDAEIEVTAPNEEERFQILKLYTKKIPLDPGVDLKMIAASCNGYVGADLEALCREATILAAKRFKSENENASNLNIMVEDWNNARAMVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSEAFSRLGISPVRGILLHGPPGCSKTTLAKAVANAAQASFFSLSGAEMYSMYVGEGEALLRNTFQRARLAAPSIIFFDEADVVAAKRGDFSSNSSTVGERLLSTLLTEMDGLEEATGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDSEARYEILCVHTRGMKLGSDVNLRRLADDTEFFTGAELEGLCKEAGIVALRENISATAVCDRHFQVVRNSVNPALTKEEIDSYSSFMKTSSSAFSRHFKSSSKLDNKRSNILGSMAKLGIVGCLLLAATKYFFMHEEQSVYEVAIT 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1831g0001 604 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Prci1831g0001 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 542 IPR027417 -
Prci1831g0001 604 CDD RecA-like_CDC48_r2-like 294 454 - -
Prci1831g0001 604 Gene3D - 10 188 IPR027417 -
Prci1831g0001 604 Pfam ATPase family associated with various cellular activities (AAA) 53 187 IPR003959 GO:0005524|GO:0016887
Prci1831g0001 604 Pfam ATPase family associated with various cellular activities (AAA) 323 455 IPR003959 GO:0005524|GO:0016887
Prci1831g0001 604 Gene3D - 190 272 - -
Prci1831g0001 604 SMART AAA_5 319 458 IPR003593 GO:0016887
Prci1831g0001 604 SMART AAA_5 49 191 IPR003593 GO:0016887
Prci1831g0001 604 PANTHER AAA-FAMILY ATPASE 16 548 - -
Prci1831g0001 604 Gene3D - 458 549 - -
Prci1831g0001 604 Pfam AAA+ lid domain 478 523 IPR041569 -
Prci1831g0001 604 Pfam AAA+ lid domain 212 247 IPR041569 -
Prci1831g0001 604 FunFam Cell division control protein 48 homolog B 10 188 - -
Prci1831g0001 604 FunFam Cell division control protein 48-B-like protein 273 457 - -
Prci1831g0001 604 FunFam spermatogenesis-associated protein 5-like protein 1 457 543 - -
Prci1831g0001 604 CDD RecA-like_CDC48_NLV2_r1-like 18 187 - -
Prci1831g0001 604 Gene3D - 273 457 IPR027417 -
Prci1831g0001 604 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 18 246 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1831g0001 254 544 Calmodulin-binding Proteins AT3G56690 46.048 6.89e-83 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1831g0001 - - gmx:100814288 923.694