Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1830g0001 GGCCTTCCTAAACATTTCTGCGAGGTGAATTTGCCCAAGACTGATTCTATGATTGTTTTAGAAGATGAGAGTGGAAAAGAATATAAAACAAAGTATCTTACCGATAAGATAGGTTTAAGTAGTGGTTGGAAAGGGTTTTCCACAGCTCATAATTTACATGAGGGTGACGTTTTAGTTCTCCATTTAATCCAACCTTTAAGGTTCAAGGTGTACATCATAAGATCTCATATGTCAAATGAAATGGATGTCGCTCTAAGCCTTCTATATTTAAACAGTTGCATGCAACAACATGATCTTGATGTTCCTCAAGAAAATGACTTAAACAATAACAGAATGATATGTGATGCTATACCACTGTCAAATCACCTTGACTTCACAAGTGATGATTTAGAAGAAAATGTTGGTCTTGAAGCTTTGAATGGGATTGCATTGGCGAGATCTATGATCACTTTCCAACAAGTAACAAGTATTGATAATTTTAGCATCGTGGTTAATGGCTTGGTACTTGACTCCCAACTACCCCAACACCTCAAAACCAAATACTATGAACTTTGTTGTAGTCAGCAAATGTTTCTTCATAAGCATCTTCTTGGAGGTCAAAATTGTCAACTAGTCATTGGAATGATTCGTGAGATCATTAATATTTCTGATGCCATTAAAGCTAGCAAGATCACAACCCCTTCAAGTAGTTTTGTCGTGTGGCATAAAAAGTTAAAAGGCCTTGAAACATGGGGCATGAACGTTAGGTTCTTGCTTACTAGGCTAGAACAGCTCATGATTTTAGCTTCAGAACTTAAGAGCTACGAGGAGGCAAGGAAAGATCAAGACCACATTGAAAAAGAAAAGAAAGATCTTGAAATAAAACTTGAAGAAGTTGAAGAAACAATAAAAAGACTTGATGGTGAGATTGACTCTCTAAATCCAAACCCTGAGATGTTGGAGGTTGAGTTTCAAGAACTTGCTAATGCTCATTGGTGA 978 0.3671 GLPKHFCEVNLPKTDSMIVLEDESGKEYKTKYLTDKIGLSSGWKGFSTAHNLHEGDVLVLHLIQPLRFKVYIIRSHMSNEMDVALSLLYLNSCMQQHDLDVPQENDLNNNRMICDAIPLSNHLDFTSDDLEENVGLEALNGIALARSMITFQQVTSIDNFSIVVNGLVLDSQLPQHLKTKYYELCCSQQMFLHKHLLGGQNCQLVIGMIREIINISDAIKASKITTPSSSFVVWHKKLKGLETWGMNVRFLLTRLEQLMILASELKSYEEARKDQDHIEKEKKDLEIKLEEVEETIKRLDGEIDSLNPNPEMLEVEFQELANAHW 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1830g0001 325 Pfam B3 DNA binding domain 2 74 IPR003340 GO:0003677
Prci1830g0001 325 ProSiteProfiles B3 DNA-binding domain profile. 1 76 IPR003340 GO:0003677
Prci1830g0001 325 SMART B3_2 2 76 IPR003340 GO:0003677
Prci1830g0001 325 SUPERFAMILY DNA-binding pseudobarrel domain 2 75 IPR015300 -
Prci1830g0001 325 Coils Coil 268 302 - -
Prci1830g0001 325 CDD B3_DNA 2 74 IPR003340 GO:0003677
Prci1830g0001 325 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 2 76 IPR044837 -
Prci1830g0001 325 Gene3D - 1 77 IPR015300 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1830g0001 1 74 B3 DNA Binding Superfamily AT5G42700 54.054 1.38e-19 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Prci1830g0001 B3 7.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1830g0001 - - pcin:129300984 642.499