LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Prci1813g0002	ATGGGTGGTTGTTTGAGCGCCCAAATTAAAGCAGAAAGCCCATGCAACTCAGGGTTAAATTCAAAGTACGCGAGCACTGACGGAAAGGATGCTAACAGCACAGGGAGCAAGGCGTCGGCAGTGTCAGTTCCTCAGACTCCAAGGAGCGAGGGAGAGATCTTGCAGTCATCCAATTTAAAAAGCTTCACTTTAGCAGAAATGAAGACGGCCACCAGAAATTTCCGTACTGATAGCGTGTTAGGAGAAGGTGGCTTTGGATCGGTGTACAAAGGATGGATCGATGAGCACTCTTTGATTCCTGCCAAACCCGGGACTGGCATGGTTATTGCTGTCAAAAGACTTAATCAAGATGGTTTCCAAGGTCACAAGGAGTGGTTGGCCGAAGTGAACTACCTTGGACAGCTCTGTCATCCTCATCTCGTGAAATTGATTGGTTATTGCCTGGAAGATGAACACCGTCTTTTGGCCTACGAATTCATGCCTCGTGGCAGCCTGGAGAATCATTTGTTCAGAAGAGGTTCATATTTTCAACCTCTCTCTTGGAGCCTCCGGATGAAAGTTGCCCTCGGTGCTGCCAGAGGGCTTGCATTTCTCCACAGCGGCGACATAAAAGTGATATACCGGGATTTCAAGACTTCAAATGTCTTGCTGGATTCCAAATATAATGCAAAACTTTCTGATTTTGGGCTGGCAAGAGATGGACCAACCGGCGACAAGAGTCACGTCTCCACCAGGGTCATGGGAACCTATGGATACGCAGCTCCTGAATATCTAGCCACAGGCCACCTAACAGCCAAGAGCGACGTGTACAGTTTTGGAGTTGTACTGCTGGAGATGCTATCGGGGCGGCGAGCCGTGGATAAGAACAGGCCATCTGGTCAGCACAATTTGGTGGAATGGGCTAAGCCCTGTTTGGCAAACAAACGAAAGATCTTTCGCATCATGGACAGTCGTCTGGAGGGCGAGTACTCGATCGATGAGGCTCACAAGACAGCAATGCTGGCTCTGCGATGCCTCTCCAGCGAGCCCAAGATCAGGCCTACCATGGATGAGGTTGTCAAAGCTTTGGAGCAGCTCCAAGTCTGCGTTCGTGAAAATGGAAGCCACCGCAACTCTCGGCCTCGTATTCGGAGAAGAAGCGCCGATGACTTTAAAGGCAGGAGGGCTTATCCCAGGCCATCTGCTTCTCCTCTCTATGCTTGA	1203	0.5004	MGGCLSAQIKAESPCNSGLNSKYASTDGKDANSTGSKASAVSVPQTPRSEGEILQSSNLKSFTLAEMKTATRNFRTDSVLGEGGFGSVYKGWIDEHSLIPAKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLCHPHLVKLIGYCLEDEHRLLAYEFMPRGSLENHLFRRGSYFQPLSWSLRMKVALGAARGLAFLHSGDIKVIYRDFKTSNVLLDSKYNAKLSDFGLARDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGRRAVDKNRPSGQHNLVEWAKPCLANKRKIFRIMDSRLEGEYSIDEAHKTAMLALRCLSSEPKIRPTMDEVVKALEQLQVCVRENGSHRNSRPRIRRRSADDFKGRRAYPRPSASPLYA	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Prci1813g0002	400	PANTHER	OS01G0588500 PROTEIN-RELATED	39	360	-	-
	Prci1813g0002	400	FunFam	Probable serine/threonine-protein kinase PBL8	160	375	-	-
	Prci1813g0002	400	ProSiteProfiles	Protein kinase domain profile.	74	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1813g0002	400	Gene3D	Phosphorylase Kinase; domain 1	49	159	-	-
	Prci1813g0002	400	Pfam	Protein kinase domain	75	354	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Prci1813g0002	400	CDD	STKc_IRAK	80	359	-	-
	Prci1813g0002	400	MobiDBLite	consensus disorder prediction	13	52	-	-
	Prci1813g0002	400	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	205	217	IPR008271	GO:0004672\|GO:0006468
	Prci1813g0002	400	Gene3D	Transferase(Phosphotransferase) domain 1	160	379	-	-
	Prci1813g0002	400	MobiDBLite	consensus disorder prediction	367	400	-	-
	Prci1813g0002	400	ProSitePatterns	Protein kinases ATP-binding region signature.	80	112	IPR017441	GO:0005524
	Prci1813g0002	400	SUPERFAMILY	Protein kinase-like (PK-like)	47	356	IPR011009	-
	Prci1813g0002	400	FunFam	Serine/threonine-protein kinase BIK1	41	159	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Prci1813g0002	28	356	Glycoside Hydrolase	AT3G07070	47.892	1.53e-107	321

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Prci1813g0002		Pkinase	1.5e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Prci1813g0002	-		-	pop:7481536	650.203