Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci180g0001 ATGGATTCTGAACATTTGTGTGATGTATTCCCAGCAGACACCAACACCCCTATTTCTGCCGATCATTTCATCTCATCTTCTTCAAGCGAACAGTACTTCAAGATCGAGGTCGAATCCAAAAGCTACTATCTCATGGACGGCGTCGTTTTAGACCATTTTACTACTACGAATGAGTGTGGCTTCTCTAATATCCCAAAGCAAGACATAGAACTGTTCATCCATACGATGTTGCCTCATTTTAATGTTCCTGGGAATGCTCAACCTCTCATGGCAGCAAAAATCTTGGCCTGCGCAGAACACATGGCGAATGTGACGCACAAGAACCACAAGATTCTGGGTATGCGTGTTGCTATATCGAATACCACTCAGCTTTATCATTATGAATATCTTCTTCGTAGGGCTGTGAATGAAGTGAATGAACATGAAGATCATCTGAGATCGATGCCGGCAAGCAAGTCAGCCGTTGAGGGATTGGTAGGGCTGAAAGTTGAACAAAAGGAAGAGAGTACTGTGGTGGGAAGAAAACTTTGTAACTGCGCAATTTGCTTTGAAGATTTTTCAATTGATTCAGAAGCTCTTCGCATGCCATGCTTACACTTGTTTCACAAAATCTGCATCATTAATTGGTTAAAGAATCGCAACACTTGCCCTCTCTGTCGTTTTCAAATGCCTGCAGGTGTGATCATCAATGAGGCCCGAGCTGCATAA 708 0.4294 MDSEHLCDVFPADTNTPISADHFISSSSSEQYFKIEVESKSYYLMDGVVLDHFTTTNECGFSNIPKQDIELFIHTMLPHFNVPGNAQPLMAAKILACAEHMANVTHKNHKILGMRVAISNTTQLYHYEYLLRRAVNEVNEHEDHLRSMPASKSAVEGLVGLKVEQKEESTVVGRKLCNCAICFEDFSIDSEALRMPCLHLFHKICIINWLKNRNTCPLCRFQMPAGVIINEARAA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci180g0001 235 CDD RING-H2_PA-TM-RING 179 220 - -
Prci180g0001 235 SMART ringv_2 178 220 IPR011016 GO:0008270
Prci180g0001 235 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 60 224 - -
Prci180g0001 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 226 IPR013083 -
Prci180g0001 235 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Prci180g0001 235 Pfam Ring finger domain 178 220 IPR001841 -
Prci180g0001 235 SMART ring_2 179 219 IPR001841 -
Prci180g0001 235 SUPERFAMILY RING/U-box 178 224 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci180g0001 128 224 C3H Transcription Factor Family AT5G01980 42.157 2.69e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci180g0001 - K22378 pcin:129295769 479.174