Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci17g0021 ATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTGAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAAAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTCGGAAAGGGTGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGAGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTGGGGTAAACCAGAAAAGTTTGGTAGAGCCGGATCTAAATGTTGGCTAG 648 0.4259 MAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLKSTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLVEPDLNVG 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci17g0021 215 Pfam Ribosomal Proteins L2, C-terminal domain 123 208 IPR022669 GO:0003735|GO:0005840|GO:0006412
Prci17g0021 215 PANTHER RIBOSOMAL PROTEIN L2 36 208 IPR002171 GO:0003735|GO:0005840|GO:0006412
Prci17g0021 215 SUPERFAMILY Nucleic acid-binding proteins 2 123 IPR012340 -
Prci17g0021 215 FunFam 50S ribosomal protein L2, chloroplastic 116 198 - -
Prci17g0021 215 Pfam Ribosomal Proteins L2, RNA binding domain 40 116 IPR022666 GO:0003735|GO:0005840|GO:0006412
Prci17g0021 215 SMART Ribosomal_L2_2 40 116 IPR002171 GO:0003735|GO:0005840|GO:0006412
Prci17g0021 215 FunFam 50S ribosomal protein L2, chloroplastic 1 112 - -
Prci17g0021 215 Gene3D - 116 199 IPR014722 -
Prci17g0021 215 SMART Ribosomal_L2_C_2 122 210 IPR022669 GO:0003735|GO:0005840|GO:0006412
Prci17g0021 215 Gene3D - 1 112 IPR012340 -
Prci17g0021 215 NCBIfam 50S ribosomal protein L2 3 205 IPR005880 GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740
Prci17g0021 215 SUPERFAMILY Translation proteins SH3-like domain 125 209 IPR008991 -
Prci17g0021 215 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci17g0021 51 209 Cytoplasmic Ribosomal Protein Gene Family AT2G18020 30.723 6.28e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci17g0021 K02886 - csv:3429293 394.43