Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Prci1798g0002 ATGCCTCCTAGGAAGAAACCCAGCTCTTCTAAGAAATCGAATCTGAGCAGCCAGGCTCAGCCTTCTAAGTTCGGCATTCAACATTTTTTTGAGCGCCACACCCAGAATGCTCTTGTGGCCTCTCAGAAGCAGCCAAAAAATGATCCAGCTGCGAACCGTCCCATTTCTGCTCCCCAAGATTCCAAGTCTGTTGCATCTCCTAACTCTCATATTCCACCTGTTGCTGGGTCGCAAGCTGTCGCTCCAAACAATTTAGATTCCGTTCTTGCTAGAGCTGAAAGTAAATTGAACTCAGACTTGGCTGGGCCAAAAATTGAGAATTCAGAATCGCAAAAGCGTAAAGACACCCCGCAAGTTGGAGCAAATGAATACAATAACGTTTCGCAGAATACTCCTTCAGAGAATTTGTTAATACCAGGGTTTGATGCTGTGGAAAATCTCCCTGAGGCGTCTCCGGAAATTTCCAAGATTGTGCCTCATAAGCGCTTTAAGTTCTCGCCTGGGATGTTAATAAAACAGAGCCAGGATGATGGGGTTGATGAAGTCACATGGAAGATATCTCCTGTGAATGAAAGACTTCAAGCAGTTTCAAAACACATGCCTCAGATGATTCAGGCTTTGGCTGAATCTTCTAGAATCAACTTATTGCCCGTTGGGATTTCCTCAGAGAATCAGACTTCTCTGACTAAAGGTGGCAAATTTGAAAAGATACTTGCTTCACCATCTACAAAGGCTGCTGAGAGGTCAACAGTGTTGAAGAATGAAAAAGGCTTGAAACGTATAAACGCAGACCAAGACATGGTTTTTAACGTCAGTTCAACTGCTGTGAATGGTTCTGGAGTAATTACTGTACAGAGCCCCTTCCGAACTCCGCCATCTCTATCCTATTGCTCTGATAAGGTGCAGCTTGTCAGGGATGTTGAGCACAATGGACTATCTGACCAGCTTTATTTAAGACAGCATAAAAAGGCATTGCTTGAACTGTTAGATCAAGTCGAAGATGCCATTTGTGTTGAAGATGCTACAATCTGTGATAAAAGTGCAAATTACATTAAGTCTCAAGATGGAATTGCTGATAATCTGCCCATCAGAGTTGACTCTGCAGCAGAAAGCACTAGAATTCATAAGCCCAAAGAGGCCCTTGGTGGGTCCAGTTCTAATTATTTGGTCTTGGAGGTATCTGAAAAACATAGTCTTGCTAATTCATCTGCTTTGCAAGGCCCATACAAGGTGCTTCGTTTAATAAATGAACAAACTGGAGAAGAGAAGGCTGCAAACTTGTTGGAAGAGTGGTCTTACAGTGTTGTTGCACCCGGAGATACTGTGAATATAATTGGTCAATTTGATGATTGGGGGCATTGTGATGTAGATCATGATAATAATTTTTTGATTGTACACCCAGATATTCTGGTGTCTGGGTCTCGGGTAGCTGCTAGTTTTACTTGTCCAAGGAGAACTGTCTTAGATGAGAGGCTAAAATGTAATGAGCACTCAATTGCTGCATTAACTGGAACCTTACTTCACCAAATTTTTCAGGCTGGACTTATCAAGGATAGTCCTTCAATAAACTTCTTAGAGGAATATGCACGATTGGTACTCCAGAGAAACATTGAAAGCTTGTATGCATGTGGAGTAAATGAAAATGATGTGCACAAAACCTTGATAGACGCCATTCCACGAATATTAAATTGGATCAAACTGTTCAAGAATTCAGAGGAAAAGAGAGATGCTTATGTTGATTTTGGATGTGATGATGGGATAAAGAAAGTCAAAGTATCGGAGGTGCTTGATATTGAGGAAATGGCATGGGCTCCTCAGTATGGTTTGAAAGGGATGATTGATGCTTCTGTCAGTGTGAAAGTTCTACCTAAGGGAAATGAATCAGATGAAAAGGTCATGCCATTAGAGTTCAAAACTGGGAAAGCAATGTCTGGCCAGTCATCTATAGAACATCGTGCCCAAGTGATCTTGTACACTCTTCTGATGTCAGAAAGGTACCTAAAGACTATCGATTCTGGTCTTCTATATTATCTCCAGTCAGATCAGACGGAGGGTATTGTTGTTCAAAGATCTGACTTAGTTGGGCTAATCATGCGACGTAATGAGCTTGCAAGTGATATTCTGAAAGCATTAACCACTCAACAACTGCCTCCAATGTTACAGAGTCTGAGCATTTGCCGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGGTACAAGGAGGAAGTGCAATGAGTAGTGGATTGGGAGATGTGTTTGATTCACATACTAATCACCTTTCATCTACTTATTGTAAGTTCCTCTGCCATTGGGATTGGCTGATTGACTTAGAAGCAAAAGAGACTGAGTTTGTAAAGAAAGAGATGTGGCGATCACATGCTTTTAAAAGTCAGAACAGTACTGGCCTTTCTTCTGTCATCCTTGATGCTTCAAATAATATTCCACATCAGAAATCTCTTAAAGATAATTGTTTCATTTATCGTTTTGTACGATGTGGTCCATCTTCCCTATCTGAAGATGGCGATCCTTCTAAAGCTACAGCAAATTATTTAGATCTGAAACTAAGAAGTGGAGACTATGTGATATTGAGCACTGAATCTAGCCGTCAAGCTATTGCCAGTGGGGTGATTACAGATATTAGTCATGCCCATGTTTCTGTTTCCTTTTCAAAGCGCCTGCGGATTCCTGGAAGCACCTCCACTAGCCAAGATCTCTATAAACAGGTTTGGAGAATTGATAAGGATGAAGGTGTGACTTCATTTGCTATTATGAGGTTTAATCTAGTACAGCTTTTTCTGCAAAATGCTCGAAGTACTCATCTGAGGAAAATGATTGTTGATCTTGAGGCTCCTAAATTTGACAGTGGATCTGTGCTCAGTCAGGACCCAGCAATATCATATGTGTGGTCAGAGAAGAGTTTGAATGATGATCAGCGTAGATCAATCCTCAAGATTCTTACTGCAAAGGACTACGCACTCATATTAGGAATGCCCGGAACAGGAAAGACATCAACTATGGTTCATGCTGTGAAAGCATTATTAATCAGAGGCACAACTATTTTGCTGACAGCTTATACAAACTCAGCTGTAGATAATTTACTTATCAAATTAAAAGCTCAGGGAATTGATTTTGTCCGTATTGGAAGACATGAAGCTGTGCATGAGGAGGTTAGAGGACACTGCCTTTCAGGTGTCCTTGGGCCCTCTCATGTTTTCCTCAATGTTTGTACTTGTGGGTGA 3246 0.4125 MPPRKKPSSSKKSNLSSQAQPSKFGIQHFFERHTQNALVASQKQPKNDPAANRPISAPQDSKSVASPNSHIPPVAGSQAVAPNNLDSVLARAESKLNSDLAGPKIENSESQKRKDTPQVGANEYNNVSQNTPSENLLIPGFDAVENLPEASPEISKIVPHKRFKFSPGMLIKQSQDDGVDEVTWKISPVNERLQAVSKHMPQMIQALAESSRINLLPVGISSENQTSLTKGGKFEKILASPSTKAAERSTVLKNEKGLKRINADQDMVFNVSSTAVNGSGVITVQSPFRTPPSLSYCSDKVQLVRDVEHNGLSDQLYLRQHKKALLELLDQVEDAICVEDATICDKSANYIKSQDGIADNLPIRVDSAAESTRIHKPKEALGGSSSNYLVLEVSEKHSLANSSALQGPYKVLRLINEQTGEEKAANLLEEWSYSVVAPGDTVNIIGQFDDWGHCDVDHDNNFLIVHPDILVSGSRVAASFTCPRRTVLDERLKCNEHSIAALTGTLLHQIFQAGLIKDSPSINFLEEYARLVLQRNIESLYACGVNENDVHKTLIDAIPRILNWIKLFKNSEEKRDAYVDFGCDDGIKKVKVSEVLDIEEMAWAPQYGLKGMIDASVSVKVLPKGNESDEKVMPLEFKTGKAMSGQSSIEHRAQVILYTLLMSERYLKTIDSGLLYYLQSDQTEGIVVQRSDLVGLIMRRNELASDILKALTTQQLPPMLQSLSICRGCRHLNVCSIYHKVQGGSAMSSGLGDVFDSHTNHLSSTYCKFLCHWDWLIDLEAKETEFVKKEMWRSHAFKSQNSTGLSSVILDASNNIPHQKSLKDNCFIYRFVRCGPSSLSEDGDPSKATANYLDLKLRSGDYVILSTESSRQAIASGVITDISHAHVSVSFSKRLRIPGSTSTSQDLYKQVWRIDKDEGVTSFAIMRFNLVQLFLQNARSTHLRKMIVDLEAPKFDSGSVLSQDPAISYVWSEKSLNDDQRRSILKILTAKDYALILGMPGTGKTSTMVHAVKALLIRGTTILLTAYTNSAVDNLLIKLKAQGIDFVRIGRHEAVHEEVRGHCLSGVLGPSHVFLNVCTCG 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Prci1798g0002 1081 MobiDBLite consensus disorder prediction 34 73 - -
Prci1798g0002 1081 MobiDBLite consensus disorder prediction 1 79 - -
Prci1798g0002 1081 Gene3D - 903 1072 IPR027417 -
Prci1798g0002 1081 Gene3D - 472 736 IPR011604 -
Prci1798g0002 1081 MobiDBLite consensus disorder prediction 99 134 - -
Prci1798g0002 1081 FunFam DNA replication ATP-dependent helicase/nuclease DNA2 918 1067 - -
Prci1798g0002 1081 MobiDBLite consensus disorder prediction 7 24 - -
Prci1798g0002 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 975 1056 IPR027417 -
Prci1798g0002 1081 MobiDBLite consensus disorder prediction 114 134 - -
Prci1798g0002 1081 Pfam AAA domain 976 1065 IPR041677 GO:0004386
Prci1798g0002 1081 CDD DNA2_N-like 472 707 - -
Prci1798g0002 1081 PANTHER DNA2/NAM7 HELICASE FAMILY 150 1051 IPR045055 -
Prci1798g0002 1081 Pfam DNA replication factor Dna2 417 619 IPR014808 -
Prci1798g0002 1081 FunFam DNA replication helicase Dna2 582 736 - -
Prci1798g0002 1081 Pfam Domain of unknown function DUF83 627 736 IPR022765 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Prci1798g0002 1 1079 Core DNA Replication Machinery Family AT1G08840 53.832 0.0 1047
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Prci1798g0002 K10742 - qsa:O6P43_017137 1341.64